PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522876.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 356aa    MW: 40055.5 Da    PI: 7.2431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-3137136193
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae+h     +++++++ l+++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010522876.1  37 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldPSSSQNGTLLSFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGTesE 131
                     89*************************999555567889************************************************54333234 PP

                     EE..E CS
              B3  89 efelv 93 
                     + +l+
  XP_010522876.1 132 KSRLF 136
                     44455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-4232146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-3034143IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-2635131No hitNo description
PfamPF023623.8E-2837140IPR003340B3 DNA binding domain
SMARTSM010191.5E-2237143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.67737143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDLSLATTGS DQEQDRDQEI ADKNMNLPVP VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE  60
KHFPLDPSSS QNGTLLSFQD RNGKMWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV  120
SFQRGVGTES EKSRLFIDWR HRPDINLLNN PTIPSSSFLH HHHHHNQFGN FNFNFNFPTS  180
VNGNRLPEHS VPRSLNFGVR GNMYQQQHQQ HQYYRQEREI VGYGYGSFVG RCWPLDQRNF  240
GGSEPLVIDS VPVVPGTISP AVMAVPPPSE VAAAGKRLRL FGVNMECGTD DHYSPSSSSG  300
RDIVDESWVR EGGGPRGEMG ASSSSSSAMR LSLSIDDDQY AKKGKSLSSF SLDLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-60311452116B3 domain-containing transcription factor NGA1
5os9_B2e-60311452116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522876.10.0PREDICTED: B3 domain-containing transcription factor NGA3
SwissprotQ9MAN11e-122NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A0D3C7101e-125A0A0D3C710_BRAOL; Uncharacterized protein
STRINGXP_010522876.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-111B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]