PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010522549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 39332.7 Da PI: 6.9333 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.1 | 1.6e-30 | 59 | 194 | 3 | 126 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg..... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ +++++ + sss++++ + XP_010522549.1 59 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQlypnLMFGSSSNGESL--Sgnlgf 151 78*************************************************************777774443433222222222212..133556 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarararert 126 + a s+ + ++++ +l+k + k + + re++ XP_010522549.1 152 fdnwdlgsagssR-----ARSRTDAQRES--FDLDKGKWIKFDDHHREHD 194 6666665333321.....22222222222..3333333333333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.789 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-29 | 60 | 188 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MRSNSREDED FQTKQEADHH HQSSVNLNQL RPSSSSSSSR QWTSAFRNPR IVRVSKTFGG 60 KDRHSKVCTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLEA AKDDVDKLPP 120 LQFPHGFNQL YPNLMFGSSS NGESLSGNLG FFDNWDLGSA GSSRARSRTD AQRESFDLDK 180 GKWIKFDDHH REHDQDNNRD HGFGIDSNSS QSHKLYSTLL NNPTVANASY FNFGHPQQSF 240 DQSGNVTVAS TANNNLNQST GEGSQLFFCP PPATAMSPLF PTYPSFLGAS NHVDGGHYLQ 300 LFSSSSNSST QQMLSGNNSS FIRPFHQLMN ANPGFHDLQR NNQDSNDNDS DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010522549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010522549.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 1e-130 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 1e-135 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010522549.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-109 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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