PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522549.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 352aa    MW: 39332.7 Da    PI: 6.9333
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.11.6e-30591943126
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg..... 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +++++  +         sss++++   +     
  XP_010522549.1  59 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQlypnLMFGSSSNGESL--Sgnlgf 151
                     78*************************************************************777774443433222222222212..133556 PP

             TCP  89 ............kaaksaakskksqksaasalnlakesrakarararert 126
                                 +     a s+ + ++++   +l+k +  k + + re++
  XP_010522549.1 152 fdnwdlgsagssR-----ARSRTDAQRES--FDLDKGKWIKFDDHHREHD 194
                     6666665333321.....22222222222..3333333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.78960118IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2960188IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRSNSREDED FQTKQEADHH HQSSVNLNQL RPSSSSSSSR QWTSAFRNPR IVRVSKTFGG  60
KDRHSKVCTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLEA AKDDVDKLPP  120
LQFPHGFNQL YPNLMFGSSS NGESLSGNLG FFDNWDLGSA GSSRARSRTD AQRESFDLDK  180
GKWIKFDDHH REHDQDNNRD HGFGIDSNSS QSHKLYSTLL NNPTVANASY FNFGHPQQSF  240
DQSGNVTVAS TANNNLNQST GEGSQLFFCP PPATAMSPLF PTYPSFLGAS NHVDGGHYLQ  300
LFSSSSNSST QQMLSGNNSS FIRPFHQLMN ANPGFHDLQR NNQDSNDNDS DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1865119155Putative transcription factor PCF6
5zkt_B1e-1865119155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522549.10.0PREDICTED: transcription factor TCP5
SwissprotQ9FME31e-130TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI81e-135R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_010522549.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-109TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]