PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522390.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 500aa MW: 55094.1 Da PI: 8.8321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.8e-17	245	294	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ + K +Ka+ L +++eYI+ Lq XP_010522390.1 245 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DHKRDKASFLLEVIEYIQFLQ 294 889***********************9....89****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-23	240	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-19	241	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.888	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-14	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-15	245	297	No hit	No description
SMART	SM00353	4.2E-13	249	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MELPQPRPFE TEGRKPTHDF LSLCSHSTVP PDPRTSSQGG HLKTHDFLQP LERVGRSGTK 60 EETSSSIQTL ASEKPPPPAP PPSSVDQHVL PGVFTVAQAS GSERNTDENS NCSSYAPGGF 120 TLWEESARKK GQTRKENVGE RASMLDAASA GQWPGPERQS QSSTTTNNRS NFSSRSSSQV 180 SGLKSQSFMD MIRSAKGSSQ DNDGDDDEEE FIMKKESPST SQKVDLRVRV DGKSTGNDQK 240 PNTPRSKHSA TEQRRRSKIN DRFQMLRQLI PNSDHKRDKA SFLLEVIEYI QFLQEKVNKY 300 EGCYQGWNPE PGKLMNWRNN SQHPAEGTVA FGPPKLEEKN SVIAMTQTAM DQQCPFPMSI 360 KHSSFYAAGP TVLTGSPVSQ FQTRVVSEER PKSGSSWEVV ASESGKPKGE EGDLVIGGGT 420 ISISTVYSQG LMKRLKEALK SSGVDMSKAS ISVQIELAKQ RPAPSTLMDE EVGGKRPRTE 480 TGEEEGHSNR NRKKLRPDRI

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MELPQPRPFE TEGRKPTHDF LSLCSHSTVP PDPRTSSQGG HLKTHDFLQP LERVGRSGTK  60
EETSSSIQTL ASEKPPPPAP PPSSVDQHVL PGVFTVAQAS GSERNTDENS NCSSYAPGGF  120
TLWEESARKK GQTRKENVGE RASMLDAASA GQWPGPERQS QSSTTTNNRS NFSSRSSSQV  180
SGLKSQSFMD MIRSAKGSSQ DNDGDDDEEE FIMKKESPST SQKVDLRVRV DGKSTGNDQK  240
PNTPRSKHSA TEQRRRSKIN DRFQMLRQLI PNSDHKRDKA SFLLEVIEYI QFLQEKVNKY  300
EGCYQGWNPE PGKLMNWRNN SQHPAEGTVA FGPPKLEEKN SVIAMTQTAM DQQCPFPMSI  360
KHSSFYAAGP TVLTGSPVSQ FQTRVVSEER PKSGSSWEVV ASESGKPKGE EGDLVIGGGT  420
ISISTVYSQG LMKRLKEALK SSGVDMSKAS ISVQIELAKQ RPAPSTLMDE EVGGKRPRTE  480
TGEEEGHSNR NRKKLRPDRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	495	RNRKKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522390.1	0.0	PREDICTED: transcription factor BIM1-like isoform X2
Swissprot	Q9LEZ3	1e-152	BIM1_ARATH; Transcription factor BIM1
TrEMBL	V4LLR0	1e-165	V4LLR0_EUTSA; Uncharacterized protein
STRING	XP_010522381.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-149	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]