PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522345.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 428aa    MW: 47163.9 Da    PI: 9.0027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-141057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v+++G g+W+++ ++  + R++k+c++rw ++l
   XP_010522345.1 10 KGPWTAAEDALLTEYVRKHGEGNWNAVTKKTALVRCGKSCRLRWANHL 57
                     79******************************99**********9986 PP
2Myb_DNA-binding39.99.9e-1363106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++ E+  ++ ++ +lG++ W++ a+ ++ gRt++++k++w++
   XP_010522345.1  63 KGSFSPHEEAVILLLHSKLGNK-WARMASQLP-GRTDNEIKNYWNT 106
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.98557IPR017930Myb domain
SuperFamilySSF466892.89E-287104IPR009057Homeodomain-like
SMARTSM007173.9E-13959IPR001005SANT/Myb domain
PfamPF002491.0E-121057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221164IPR009057Homeodomain-like
CDDcd001671.50E-101257No hitNo description
PROSITE profilePS5129421.69658112IPR017930Myb domain
SMARTSM007178.1E-1362110IPR001005SANT/Myb domain
PfamPF002493.9E-1163106IPR001005SANT/Myb domain
CDDcd001671.21E-865106No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2365111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGGGERGLKK GPWTAAEDAL LTEYVRKHGE GNWNAVTKKT ALVRCGKSCR LRWANHLRPD  60
LKKGSFSPHE EAVILLLHSK LGNKWARMAS QLPGRTDNEI KNYWNTRMKR RQRAGLPIYP  120
QSEDTQGDSS SSQFENRNNR NMIMPTPSNS PSSSSSSSSS SRPRKRHCLD PNFSAPSLDP  180
IPSDHSMSCQ MFPANHGNDS CKAGFGFSLP LSAPSSSSDM SNPNQLLEFV SENSSTCKSK  240
SSDSGFMSYS SLLMGEATEL SSFPLGLDAL ELPSNQTVPT RTFTSYSLDD NVFDPMPRGN  300
SGLLDALLEE SRALSRGGVS KEIKKRVDSS DQSSTETLVT TTSTRNQHGR KPWWVMMMTT  360
CSRAISTMSL HPHRCVIGTV RPETDPTAQI SRQAMSETFK TTVLDLDPSS VCRGVHATCP  420
RVWELISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-29811125127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522345.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522345.10.0PREDICTED: anthocyanin regulatory C1 protein-like isoform X1
SwissprotO808831e-117MB101_ARATH; Transcription factor MYB101
TrEMBLA0A178VTW31e-115A0A178VTW3_ARATH; MYB101
STRINGXP_010522345.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-109myb domain protein 101
Publications ? help Back to Top
  1. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]
  2. Xue T,Liu Z,Dai X,Xiang F
    Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
    Plant Sci., 2017. 262: p. 182-189
    [PMID:28716415]