PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522330.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82368.8 Da    PI: 5.3455
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2084140157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_010522330.1  84 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 140
                     688999************************************************995 PP
2START214.14.9e-672684881206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a++++p+W          +n++e++q f+ + +     ++ ea+r+s+vv+m++ + ve+l+d++ qW++ +     +a tl
  XP_010522330.1 268 ELAVAAMEELIRMAQVNDPLWLPGLdgssLVLNEEEYVQMFPHGIGprpagFRCEASRESAVVIMNHINIVEILMDVN-QWSTVFSgmvsRALTL 361
                     57899****************97776655569*********99999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galqlm+ae+ ++splvp R+++fvRy++q+ +g+wv+vdvS+ds +++p+     R++++pSg+li++++ng+skvtwvehv
  XP_010522330.1 362 EVLSTGvagnynGALQLMTAEFHVPSPLVPtRESYFVRYCKQQVDGSWVVVDVSLDSLRPNPT----SRCRRRPSGCLIQEMPNGYSKVTWVEHV 452
                     **************************************************************6....9*************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv++g+a+gak+wvatl+rqce+
  XP_010522330.1 453 EVDDRGVHSLYKQLVNNGQAFGAKRWVATLDRQCER 488
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2361139IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1971141IPR009057Homeodomain-like
PROSITE profilePS5007116.69881141IPR001356Homeobox domain
SMARTSM003891.2E-1982145IPR001356Homeobox domain
PfamPF000464.9E-1884139IPR001356Homeobox domain
CDDcd000862.48E-1984142No hitNo description
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
SuperFamilySSF559612.89E-35259490No hitNo description
PROSITE profilePS5084843.544259491IPR002913START domain
CDDcd088751.35E-129263487No hitNo description
SMARTSM002343.7E-65268488IPR002913START domain
PfamPF018526.8E-57269488IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5373487IPR023393START-like domain
SuperFamilySSF559617.56E-21507742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNNPKELQAE KMFQPNMLLA DMNNAENDND DDNNNNNIMN SDNNIIINGG ILRDDEFDSA  60
NTKSGSENQE GGSGNDQDPR PSKKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKQLSREL  120
GLEPLQVKFW FQNKRTQMKN HHERHENTQL RTENEKLRAD NMRYREALAN ASCPNCGGPT  180
AIGEMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVS YPLMTPPLPP RPLELGVGNF  240
GGDSYGNSGD LLRSIAAPTE ADKPVIIELA VAAMEELIRM AQVNDPLWLP GLDGSSLVLN  300
EEEYVQMFPH GIGPRPAGFR CEASRESAVV IMNHINIVEI LMDVNQWSTV FSGMVSRALT  360
LEVLSTGVAG NYNGALQLMT AEFHVPSPLV PTRESYFVRY CKQQVDGSWV VVDVSLDSLR  420
PNPTSRCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRGVH SLYKQLVNNG QAFGAKRWVA  480
TLDRQCERLP SVMATNIPTG DIGVITNQEG RRSMLKLAER MVISFCSGVS ASTAHTWTTL  540
SGTGADDVRV MTRKSLXECV VGRVCMYICI PVPPKRVFDF LRDENSRNEW DILSNGGVVQ  600
EMAHIANGRE TGNCVSLLRS ANSSQSNMLI LQESCTDATA SFVIYAPVDI VAMNVVLNGG  660
DPDYVALLPS GFAILPDGTS PHPAPAGASN GGSMGDGAGE AGGSLLTVAF QILVDSVPTA  720
KLSLGSVATV NNLIACTVER IKASLSCENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522330.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9SDV30.0B9SDV3_RICCO; Homeobox protein, putative
STRINGXP_010522330.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2