PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522232.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 156aa    MW: 17422.8 Da    PI: 8.4394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-0542811054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ ++++ L++l+ +      +K + a++L +A++YI+ L
  XP_010522232.1 42 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFL 81
                    67889999***********99.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-123198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1031102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2143281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00244087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-64286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEISRDSGMM MEDKRSLYSL EESSISSLSP KRHKSSISFS SKERKDKVGE RISALQQLVS  60
PYGKTDTASV LLEAMQYIQF LHEQVKVLSA PYLQMNPAIK EQEGEFEHYG LRNRGLCLVP  120
ISYTLGVAQS NGADIWAPVK TPPSPAFGVR SHSPFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522230.11e-112PREDICTED: transcription factor bHLH113
RefseqXP_010522231.11e-112PREDICTED: transcription factor bHLH113
RefseqXP_010522233.11e-112PREDICTED: transcription factor bHLH113
RefseqXP_010522234.11e-112PREDICTED: transcription factor bHLH113
RefseqXP_010522235.11e-112PREDICTED: transcription factor bHLH113
SwissprotQ7XJU23e-79BH153_ARATH; Transcription factor bHLH153
TrEMBLD7KF727e-77D7KF72_ARALL; Uncharacterized protein
STRINGXP_010522230.11e-112(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-76bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]