PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522215.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 322aa MW: 34896.2 Da PI: 6.1031

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	250	295	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Ave+Ik Lq XP_010522215.1 250 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 295 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.056	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-15	247	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-11	248	298	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.7E-14	249	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-9	250	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MYQSSPSTSS SQKSSLPGGG LIRYGSAPGS LLNSAVDAVI GQPENFLGHF FSGDSSSLRS 60 ESTCGVSSSD GRKDLGKDLL DRSYGLEEIS QHRSSDNANS GPYSLARQRS SPADFFSYLT 120 SDKNGFSVSQ LSQGTGEYSG GGRTRLKTQL SFTGHHDSLG RISEVNESAI DDTSDHSFAT 180 DSWDDASGGS IGFTMTRPAK RPRDTDPSPF SQFSISDTSH SYMENFMQLP EDSVPCKIRA 240 KRGCATHPRS IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVEH IKGLQQQLDK 300 LQKEQGDCTC GCGERPDEGC GL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522215.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522215.1	0.0	PREDICTED: transcription factor bHLH128
Swissprot	Q8H102	1e-132	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1J3CWR7	1e-142	A0A1J3CWR7_NOCCA; Uncharacterized protein
STRING	XP_010522215.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-116	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]