PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522114.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 339aa MW: 37312.8 Da PI: 7.0229

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	24	139	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eaesss 79 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ ss+++ ++ +a+++ XP_010522114.1 24 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLNESqelalrdvqggkaaeSSDPNFQMvDAKDDD 118 589**************************************************************999999998887765555554444333333 PP TCP 80 ssasnsssg...........k 89 +++++ + XP_010522114.1 119 DDHHHQTVQfssslvaplanL 139 333333333444455555542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-30	25	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.429	27	85	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGLKSSGSGG GEIVQVEGGH IVRATGRKDR HSKVFTSKGP RDRRVRLSAH TAIQFYDVQD 60 RLGYDRPSKA VDWLIKKAKS AIDKLNESQE LALRDVQGGK AAESSDPNFQ MVDAKDDDDD 120 HHHQTVQFSS SLVAPLANLD PEDAMKTFFP TSSTNSSINF QNYPHDIISR TANLNQDLGL 180 SLHPSFHGDS GQAGSSTDQT LFATFEANNF QRMSGWNSEL TPEQRGFLVS SSSHQPSVPT 240 LLNHQQTLFL GQGPPLLSHQ RGTLQSSFLQ PFRSWDHHTD HHHHHHQQNQ SSVFASQFGS 300 HGIMQGLSVH NRIHGEEGEG LGPHRPSASS SSPPHNSHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	32	85	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	32	85	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522114.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522114.1	0.0	PREDICTED: transcription factor TCP10
Refseq	XP_010522115.1	0.0	PREDICTED: transcription factor TCP10
Swissprot	O82277	1e-85	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A1J3IRA7	3e-91	A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRING	XP_010522114.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	8e-81	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]