PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521861.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 767aa    MW: 85309.2 Da    PI: 5.5804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.58.7e-1133947641373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs +d + a++lL ++++++sp g   +R+a+yf++ L+arla++++++y +l++++ts    ++ l+a++ +  v+P+ k++ 
  XP_010521861.1 394 LRTLLVLCAQAVSVDDRRTANELLRQIRQHSSPLGVGSERMAHYFANSLEARLAGTGTQIYTTLSSKKTS---AADMLKAYQKYISVCPFKKIAI 485
                     5789*************************************************************99999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ Il  +  ++++HiiDf+is+G+QWp++++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+++ +a+++e+
  XP_010521861.1 486 IFANHSILHLAGDAKTIHIIDFGISYGFQWPSFIHRLSWRPGGPPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRYNVPFEYTA-IAQKWET 579
                     ********************************************************99*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++++gE +aVn+ ++  +llde+v ++s+rd+v klv++++P++++ +    ++n++ F++rf ea+ +ysalfd+ +++l+re+e r 
  XP_010521861.1 580 IKVEDLKINQGEFVAVNSLFRFRNLLDETVVVNSPRDAVFKLVRKVKPNIFIPAILSGSYNAPFFVTRFREAMFHYSALFDMCDTNLSREDEMRL 674
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e+ grei+nvvaceg+er+er et+++W++r  +aGF+++pl+++  ++ kl +++ +++ + v+++ ++l++gWk+r +++ SaW
  XP_010521861.1 675 MFEKEFYGREIMNVVACEGTERVERPETYKQWQARAIRAGFRQLPLEKELIDKLKLKVETGYDKDFDVDQDGHWLLQGWKGRIVYASSAW 764
                     **************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.646368745IPR005202Transcription factor GRAS
PfamPF035143.0E-110394764IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MGSYSPGYPG SLDGFDFNNQ IDLPGSNETL GVGNGFYLDD PLLDLASLDV PSAPPTTNFQ  60
NPGTGSSSPS DDSDFSDSVL KYISQVLMEE DMQEKPCMFH DALALQAAER SLYEALGEDY  120
PSSLDQQQPP CPNQPADSPH GSWSGGSSDH GASSTTTSSD SHWSFDGSDQ RPSWLQTPVP  180
SNYVFQSTSR SSPQSTTSFS NNLAGGDNNG IFGSGFSGDL VSSMFNESEL VMQFKKGVEE  240
ASKFLPKSSQ LVIDVENYIP SSGFKENDHK VFVKKEKDER EDSSSSYRLN GKKSHGREDE  300
DLVEERSNKQ SAVYVEESEL SEMFDKVLLC GGGNGQPLCI LNQTFSNDSG KESSNKSSKG  360
ETMQQNVQVN GTKARGKKQG GSSGSNSKKE TADLRTLLVL CAQAVSVDDR RTANELLRQI  420
RQHSSPLGVG SERMAHYFAN SLEARLAGTG TQIYTTLSSK KTSAADMLKA YQKYISVCPF  480
KKIAIIFANH SILHLAGDAK TIHIIDFGIS YGFQWPSFIH RLSWRPGGPP KLRITGIELP  540
QRGFRPAEGV QETGHRLARY CQRYNVPFEY TAIAQKWETI KVEDLKINQG EFVAVNSLFR  600
FRNLLDETVV VNSPRDAVFK LVRKVKPNIF IPAILSGSYN APFFVTRFRE AMFHYSALFD  660
MCDTNLSRED EMRLMFEKEF YGREIMNVVA CEGTERVERP ETYKQWQARA IRAGFRQLPL  720
EKELIDKLKL KVETGYDKDF DVDQDGHWLL QGWKGRIVYA SSAWAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5140176626380Protein SCARECROW
5b3h_A6e-5140176625379Protein SCARECROW
5b3h_D6e-5140176625379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521861.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521861.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLE4MWR10.0E4MWR1_EUTHA; mRNA, clone: RTFL01-12-F16
STRINGXP_010521861.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]