PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521856.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 265aa MW: 27261.3 Da PI: 10.5886

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.4	2.6e-38	33	118	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s+ ++ +s + XP_010521856.1 33 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSVRGGG-NSTS 118 78*******************************************************************8884433333333.3332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-33	39	135	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSNPDGAGNA VSNGAMIDRH RQNSTSAGNG ALAVKKPPSK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTASVSV RGGGNSTSLS 120 SFSSLDHKPL SGPAPFILGK RVRAEEDSGG GGKDDGGVTS VGHTMGSFVG SASPAGFWAV 180 PARPDFGQFW SFAAAAGAPP EMVLQSASIT QQTAALFVHQ QQQAAAAMGE ASAARVGNYL 240 PGHLNLLASL SGGTAGSNRR EDDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521856.1	0.0	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	1e-108	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J3E1H4	1e-118	A0A1J3E1H4_NOCCA; Transcription factor TCP7 (Fragment)
STRING	XP_010521856.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-75	TCP family protein