PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521778.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 279aa    MW: 30273.5 Da    PI: 8.5636
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1282.7e-4040100262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e+alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s+
  XP_010521778.1  40 PEQALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRST 100
                     7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-303898IPR003851Zinc finger, Dof-type
PfamPF027013.9E-344298IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5164498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPSCAAQQE MSNQTLETIL VCTKSNNNAQ DHQKKQRPQP EQALKCPRCE STNTKFCYYN  60
NYSLSQPRYF CKSCRRYWTK GGTLRNVPVG GGCRKNKRST SSSSSSSKNN LIKTFHDEPL  120
NNPLITALPP LGYDPVDLNL AFARLHQKHS FGPSQVSLFA NSEGEVFGNS SGTGLFGGQN  180
GNFGSGLGYG FMTGSDDHRL NSSTGATPMA MRFEGGGNNK QEGPVSGNNE NPNKVLWGFP  240
WQMNGEVSGG GGAPEIDAGR ESWNGFSSTW HGLLNSPLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521778.10.0PREDICTED: dof zinc finger protein DOF2.1
SwissprotQ8LE432e-85DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLD7LJK05e-93D7LJK0_ARALL; Uncharacterized protein
STRINGXP_010521778.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-73Dof family protein