PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521760.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 636aa    MW: 70421.6 Da    PI: 7.4679
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.5e-22109199186
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF ++ 
  XP_010521760.1 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDIHGEVWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRSP 199
                     89****************************997556555..8***********************************************9543 PP
2Auxin_resp113.71.7e-37229312183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+++a+ +++FevvY+Prast+eF+vk+++v +a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  XP_010521760.1 229 AVERARRGKAFEVVYYPRASTPEFCVKASEVGRAMSIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 312
                     6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-33104204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-27105203IPR015300DNA-binding pseudobarrel domain
CDDcd100176.67E-21108205No hitNo description
PfamPF023621.4E-19109199IPR003340B3 DNA binding domain
SMARTSM010193.3E-16109208IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983109212IPR003340B3 DNA binding domain
PfamPF065073.3E-32229312IPR010525Auxin response factor
PROSITE profilePS5174522.609523611IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MEQEKSLDPQ LWHACAGSMV QIPPVTSTVF YFPQGHAEHA HAPLDFHAPP RVPPLTLCRV  60
AAVKFLADAE TDEVFAKITL IPFPNNTADD PENDAVPDSG GDVNKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY TADPPVQTVV AKDIHGEVWK FRHIYRGTPR RHLLTTGWST  180
FVNHKKLVAG DSIVFLRSPD SGELCEXSKG GTAARQRGDR GEGRVVAEAV ERARRGKAFE  240
VVYYPRASTP EFCVKASEVG RAMSIRWCSG MRFKMAFETE DSSRISWFMG TVSAVQVADP  300
IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNMPS IHLSPFSPRK KLKIPPPPFD  360
FPFEGSKFPM SILHNDNNNA PAGIQGARHA HHLFGPSSFL SDLNLSSFSG NNKLQSPGLF  420
FPGFKQLNHP QPRNYDTTPL PWLQRDPSPS ISCSLTMGNP ASVQDSKTGS GKTHQFLLFG  480
QPILTEQQVL SRKRSLEGLN PEAEEKHSAR GLTWNCSLEG LETGHCKVFM ESEDVGRTLD  540
LSVIGSYQEL YRKLVDMFGI EERSDLLIHI LYRAADGDVK RIGDEPFSDF MRTAKRLTIK  600
MDTGGDNVRK NLITGIGKGE NGIEASSKTG PLSILA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-76733351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521760.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10
SwissprotQ9SKN50.0ARFJ_ARATH; Auxin response factor 10
TrEMBLA0A078FS550.0A0A078FS55_BRANA; Auxin response factor
STRINGXP_010521760.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  4. Nguyen TC,Obermeier C,Friedt W,Abrams SR,Snowdon RJ
    Disruption of Germination and Seedling Development in Brassica napus by Mutations Causing Severe Seed Hormonal Imbalance.
    Front Plant Sci, 2016. 7: p. 322
    [PMID:27014334]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]