PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521505.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 297aa    MW: 31362.9 Da    PI: 6.9234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e+d  + +a   +  +   +W++Ia+ ++ g+t+ q+k+++ 
   XP_010521505.1 11 TWSREDDIAFENALVTHLDEtedRWEKIAADVP-GKTPDQIKEHYE 55
                     7***********999998778************.**********95 PP

2Myb_DNA-binding422.2e-13119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_010521505.1 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.566762IPR017884SANT domain
SMARTSM007178.2E-9860IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-101066IPR009057Homeodomain-like
PfamPF002497.1E-71155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-61162IPR009057Homeodomain-like
CDDcd001671.23E-81158No hitNo description
PROSITE profilePS5129417.173112168IPR017930Myb domain
SuperFamilySSF466891.22E-16114169IPR009057Homeodomain-like
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17116166IPR006447Myb domain, plants
PfamPF002492.7E-11119163IPR001005SANT/Myb domain
CDDcd001678.54E-10119164No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10119162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTVDEVSGSS TWSREDDIAF ENALVTHLDE TEDRWEKIAA DVPGKTPDQI KEHYELLVED  60
INKIESGCVP LPTYSSPEGS NGHAGEEGGT GKKGGGSHGG DSNHGGKSKP EQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNGDI SSPQGPITGQ NNNGGAAGPV GGSTKSAKQA ASQPTPGPPA MYGAPTIGQP  240
VGGPLVSALG TPVNLPAPAH MAYGVRAPPV PGSVVPGAPM NMAPMPYPMP HAPTTHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1712801179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521505.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521505.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-161SRM1_ARATH; Transcription factor SRM1
TrEMBLE4MWT41e-170E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBLV4LAV41e-170V4LAV4_EUTSA; Uncharacterized protein
STRINGXP_010521505.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-119MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]