PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521479.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 323aa MW: 35596 Da PI: 5.7355

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	54	93	2	45
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 r +h+ E+rRR++iN++f+ Lrel+P++ ++K + a+ L XP_010521479.1 54 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLV 93 899*************************8....67777777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-11	49	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	50	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.998	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	54	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.38E-9	54	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRIGKGNLDE EEYGDDEFGP NRHGPSSNTT VHSNNNSIAA ANKDAKNSDK AAIRSKHSVT 60 EQRRRSKINE RFQILRELIP HSDQKRDTAS FLVEVCYVGL DDGKWESPSR GSLDFCSRLV 120 PVLISWFEQR NSHWRVQGFA DHPNNGSGPG TPFHGKFEEN NNMMTATTPA IQNPVESEHD 180 RDVSFRPTDR QPELDNKGLS LSMSVAPIPQ LSHSHGGAQS IESPARGSDL PCQQPEDPVI 240 EGGTINISSV YSHELLTSLT QALEKAGVDL SHARLSVQID LGKRSDQGVA SANKDPESDN 300 EGAKDPGCCE EESDHSYKRM KKT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521479.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521479.1	0.0	PREDICTED: transcription factor BIM2-like
Swissprot	Q9CAA4	1e-92	BIM2_ARATH; Transcription factor BIM2
TrEMBL	R0I005	1e-101	R0I005_9BRAS; Uncharacterized protein
STRING	XP_010521479.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-81	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]