PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010521473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 25233.8 Da PI: 10.1161 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.4e-19 | 65 | 118 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq + Le F +++++ e++e++A++lgL+ rqV vWFqNrRa++k+ XP_010521473.1 65 KRKLSEEQAKLLELSFVREQKLESERKERIAAELGLEPRQVAVWFQNRRARWKN 118 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 109.9 | 1.7e-35 | 64 | 155 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq+klLE sF +e+kLe+erK+++a eLgl+prqvavWFqnrRAR+k+k+lE+d+ +L++ +d ++ ++++L+++v +L+e+l+e XP_010521473.1 64 RKRKLSEEQAKLLELSFVREQKLESERKERIAAELGLEPRQVAVWFQNRRARWKNKKLEEDFFKLQTLHDDVVLQKCHLQSQVVKLKEQLSE 155 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.503 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 62 | 123 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.93E-17 | 62 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.28E-15 | 64 | 120 | No hit | No description |
Pfam | PF00046 | 3.8E-16 | 65 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 66 | 124 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MYHLHNLDEL LMFMPHEYPS GSSIQTPPLH GETKPLVIRR RRRMRRRKRG SSPSSSEAEM 60 VGSRKRKLSE EQAKLLELSF VREQKLESER KERIAAELGL EPRQVAVWFQ NRRARWKNKK 120 LEEDFFKLQT LHDDVVLQKC HLQSQVVKLK EQLSEAKNKI RQLAERSGGT STNKSSSSSP 180 SGNFVPENDY DIDMFYMSEN NYILQHMEWI PLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 45 | RRRRRMRR |
2 | 38 | 48 | RRRRRMRRRKR |
3 | 40 | 47 | RRRMRRRK |
4 | 41 | 46 | RRMRRR |
5 | 46 | 66 | RKRGSSPSSSEAEMVGSRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010521473.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521473.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein ATHB-53-like | ||||
Swissprot | Q9LVR0 | 1e-50 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | A0A0D2TIR8 | 9e-55 | A0A0D2TIR8_GOSRA; Uncharacterized protein | ||||
STRING | XP_010521473.1 | 1e-158 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 3e-50 | homeobox 53 |
Publications ? help Back to Top | |||
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