PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521378.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 355aa    MW: 39653.6 Da    PI: 4.6882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20110159255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp +   r+r++lg+f+taeeAa  +++a+ +l+g
  XP_010521378.1 110 KFRGVRQRP-WGKWAAEIRDPDQ---RRRIWLGTFDTAEEAAVVYDNAAIRLRG 159
                     89*******.**********854...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-30109166IPR001471AP2/ERF domain
PfamPF008471.9E-12110159IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21110167IPR016177DNA-binding domain
PROSITE profilePS5103223.657110167IPR001471AP2/ERF domain
SMARTSM003801.5E-37110173IPR001471AP2/ERF domain
CDDcd000181.30E-34110166No hitNo description
PRINTSPR003672.0E-10111122IPR001471AP2/ERF domain
PRINTSPR003672.0E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMMSEYVDVK YTEHRALVTK YAKTSPGKLR SESRMVRISV TDPDATDSSS DEGESLFPRR  60
RVKRFLNEVR VEPSCVGNHS ASVPAKARKR MAVETPSSPV KVSINSGGRK FRGVRQRPWG  120
KWAAEIRDPD QRRRIWLGTF DTAEEAAVVY DNAAIRLRGR DALTNFVVPP AMRRDKSEPE  180
KPETNSSTAV ATTSSSCESS DESLNHLSSP TSVLNFRTHL SEEAEPITKP APPVKPEMPE  240
SPWFPDEPVT KPTIPVESDM PEAPWFQAGK SISVSSDDLL PLDIPFLDNF FNEPPEISIF  300
DKPMPEIMPE NDFFAHMFFD GGINIGGSDP LPEFNLDDIN DFEDLLVMPE PLSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20108166362ATERF1
3gcc_A1e-20108166362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521378.10.0PREDICTED: ethylene-responsive transcription factor CRF4
SwissprotQ9SUE33e-98CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLV4NBA35e-99V4NBA3_EUTSA; Uncharacterized protein
STRINGXP_010521378.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-86cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]