PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521354.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 658aa    MW: 70479.3 Da    PI: 6.2055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.83.5e-1062816582374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+s+g++  a ++Lar+s++ +p+g++ q+l  +++ AL++rl+     +    +ps+ s     e+l +++l++e+sP++k++++
  XP_010521354.1 281 RQTIMEVATAISEGKTDIAAEILARVSQTLNPKGNSEQKLMEFMLLALRTRLNT----VE---NPSPVSVLYGNEHLGSTQLLYELSPCFKLGFM 368
                     6899*************************************************9....33...55555555599********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlv 182
                     +aN aIlea+  + ++H++Dfd+++G+Q+++Ll+ L++R+   ++pp ++iT+v +++ g       +e+++++g+ L+++ e+lg++++fnv+ 
  XP_010521354.1 369 AANLAILEATLDDGHLHVVDFDVGEGGQYVNLLHVLSTRRngiAPPPGVKITAVLDSHDGaavsgsGEERMKSVGDLLSQLGERLGITLSFNVVS 463
                     *************************************999676679********99777699999999*************************88 PP

            GRAS 183 akrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     + rl +l  + e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vksl P+vv++veqe++ n+++Fl+r++ea+ yy al+ds+e+++
  XP_010521354.1 464 SVRLGNLsrDRESLGCDPDEPLAVNLAFKLFRVPDESVCTENPRDELLRRVKSLAPRVVTLVEQEMNANTAPFLARVSEACAYYGALLDSVESTV 558
                     88**99977789*********************************************************************************** PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368
                      + +++r+kvE+  l+r++vn vaceg +r+er+e ++kWr r+++aGF+  pls+++a++ ++ l++ +    g++v+e++g +++gW++r+L 
  XP_010521354.1 559 LSSNSNRVKVEEG-LSRKLVNTVACEGVRRVERCEVFGKWRLRMGMAGFELTPLSQTIAESLRSRLSNGNrvHPGFTVKEDNGGVCFGWMGRTLA 652
                     *************.*************************************************99988776789********************* PP

            GRAS 369 svSaWr 374
                     ++SaWr
  XP_010521354.1 653 VASAWR 658
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.961254636IPR005202Transcription factor GRAS
PfamPF035141.2E-103281658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MASGFSGGGG PDFFAGGGRS MNSGSNNSNS NNPPLSQQSY RNQLPGIFHD QIGNRNSGVH  60
GFAGKRTLAD FQAAAQTQTQ FQNLAALNAL LLRSVKPRTF QNLPSPISPL PSQFDLSAND  120
INMLGGSSSS IQRFGLPILP HLRSNHLPQM SQPGLGLCCG GRMGFGPDNT ALQGVSCADP  180
VQNRAQPDSD SEKMMSRLKE LEKRLLDDDG DVQGDDAVSV ITNANSEWSE TIQSLVSPVM  240
SPNPTPTTNL NSNPVSSSPS SSSSSSSSSP SAASPISLYS RQTIMEVATA ISEGKTDIAA  300
EILARVSQTL NPKGNSEQKL MEFMLLALRT RLNTVENPSP VSVLYGNEHL GSTQLLYELS  360
PCFKLGFMAA NLAILEATLD DGHLHVVDFD VGEGGQYVNL LHVLSTRRNG IAPPPGVKIT  420
AVLDSHDGAA VSGSGEERMK SVGDLLSQLG ERLGITLSFN VVSSVRLGNL SRDRESLGCD  480
PDEPLAVNLA FKLFRVPDES VCTENPRDEL LRRVKSLAPR VVTLVEQEMN ANTAPFLARV  540
SEACAYYGAL LDSVESTVLS SNSNRVKVEE GLSRKLVNTV ACEGVRRVER CEVFGKWRLR  600
MGMAGFELTP LSQTIAESLR SRLSNGNRVH PGFTVKEDNG GVCFGWMGRT LAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-362546582419Protein SHORT-ROOT
5b3h_E2e-362546582419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521354.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4LHQ50.0V4LHQ5_EUTSA; Uncharacterized protein
STRINGXP_010521354.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8