PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521205.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 342aa    MW: 38843.6 Da    PI: 4.5357
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.45.9e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++ +i+fs++++l  +s
  XP_010521205.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIGLIMFSPSDRLSLFS 58
                    79******************************************998776 PP
2K-box20.71.7e-08121192980
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                     + +++ e+l+qe+ +L++++++ ++e+R++  + L   s++e    e++L + l+++ ++++ ll +q++  
  XP_010521205.1 121 AINSDVEELEQEICRLQQQLHMSEEELRKYEPDPLRFTSMEEFDTCEKNLLDTLTRVVQRREYLLSNQLSSY 192
                     5577899*************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.637161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28281IPR002100Transcription factor, MADS-box
CDDcd002651.75E-34275No hitNo description
PRINTSPR004042.8E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-5125193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIGLIMFSP SDRLSLFSGK  60
TRIEDVFARY INLPDQEREN ALIFPDQKRR PDIESKEYLL RILQQLKTEN DIALQLTNPA  120
AINSDVEELE QEICRLQQQL HMSEEELRKY EPDPLRFTSM EEFDTCEKNL LDTLTRVVQR  180
REYLLSNQLS SYEPSTAMQQ SMGGSFVNDV VAWLPEGGPN QAQIFDASAH SNHLRDMSSA  240
TYDPMLQVSS SSSNQNMGEC HVSNGNGDLF HDWAQAYTST ALHQPTDIPP ALFPPIQHGL  300
MGNGISEMMS AQEGEMPIIT TEAHVDHEVS DYETTLPQLS SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18190191MEF2 CHIMERA
6byy_B4e-18190191MEF2 CHIMERA
6byy_C4e-18190191MEF2 CHIMERA
6byy_D4e-18190191MEF2 CHIMERA
6bz1_A5e-18190191MEF2 CHIMERA
6bz1_B5e-18190191MEF2 CHIMERA
6bz1_C5e-18190191MEF2 CHIMERA
6bz1_D5e-18190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521205.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
SwissprotQ9LM461e-175AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A087HQB91e-175A0A087HQB9_ARAAL; Uncharacterized protein
STRINGXP_010521205.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-177AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]