PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521193.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 318aa    MW: 34603.5 Da    PI: 7.6622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-21142191255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  XP_010521193.1 142 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDEAAFRLRG 191
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-33141199No hitNo description
SuperFamilySSF541713.07E-23142199IPR016177DNA-binding domain
PROSITE profilePS5103223.156142199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32142200IPR001471AP2/ERF domain
SMARTSM003807.5E-38142205IPR001471AP2/ERF domain
PRINTSPR003672.8E-11143154IPR001471AP2/ERF domain
PfamPF008475.2E-15143191IPR001471AP2/ERF domain
PRINTSPR003672.8E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAAAMEFYNN SSRRIQRSDP FGGELMEALV PFFKSPSPSS SSSSSFPSPS PSSTFGSFPE  60
ICSTSMAHPF SFGSDVQLPG LNPSSQIQSQ IDLHGYGFPL PHNQGGSFSN LLGPKPVLMK  120
NPGSIGSGFG FGSGQPPKPT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL  180
AYDEAAFRLR GDFARLNFPS LRHSGSQIGE YQPLHSSVDA KLDAICRTLA ETQKQGRSEK  240
QPRKKSSTAK QPTLEKVKTE DIAVAGSPPA AESDGSAGSS PLSDLTFADS DEQGQWNTNF  300
ALEKYPSYEI DWESILSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521193.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-116RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1J3DPF11e-124A0A1J3DPF1_NOCCA; Ethylene-responsive transcription factor RAP2-4
STRINGXP_010521193.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-94related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]