PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010521160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21324.8 Da PI: 9.227 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.9 | 3.4e-10 | 47 | 74 | 15 | 42 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42 kR+ g+lKK EL vLC++ ++ ii+s XP_010521160.1 47 KRKVGLLKKLTELTVLCGIPACAIIYSD 74 9*************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0033 | 31 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.769 | 43 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-13 | 46 | 118 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-8 | 47 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MRLLLSRSAS HFLANLSTLC KSLLSNQHTT LVNGKAPVKE MFIFIGKRKV GLLKKLTELT 60 VLCGIPACAI IYSDYSEEPE VWPNRREAHA ILDRLRRLPR AKQTKHMLDQ GDFVHQMIGK 120 LERELERERR KNSLIELGLV AFHNDLNDAD YSEELSVAAR LLEQRIKAVT ERIESSIRMS 180 VFADEI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010521160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521160.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X1 | ||||
Refseq | XP_010521161.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X1 | ||||
TrEMBL | A0A087HQF0 | 3e-46 | A0A087HQF0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010521160.1 | 1e-134 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22590.2 | 4e-41 | AGAMOUS-like 87 |