PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521146.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 254aa    MW: 28618.4 Da    PI: 8.0668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_010521146.1 14 KGAWTKEEDKLLIDYIRTHGEGCWRSLPKAAGLQRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding58.41.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ ++G++ W++Ia +++ gRt++++k++w+++
   XP_010521146.1  67 RGNFTDEEDELIIKLHSMFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.687961IPR017930Myb domain
SuperFamilySSF466891.87E-3012108IPR009057Homeodomain-like
SMARTSM007175.7E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001672.11E-111661No hitNo description
PROSITE profilePS5129428.92762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2965116IPR009057Homeodomain-like
SMARTSM007176.8E-1866114IPR001005SANT/Myb domain
PfamPF002491.1E-1667111IPR001005SANT/Myb domain
CDDcd001671.30E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRSPCCEKA HMNKGAWTKE EDKLLIDYIR THGEGCWRSL PKAAGLQRCG KSCRLRWMNY  60
LRPDLKRGNF TDEEDELIIK LHSMFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPQTHRPIT EPAAPPNPPP SPHAGHSSVL SPPIKFAGED PETVKAEPLS QEEGNYTSNG  180
TTTSYKEIPK EHHFELNLEL SVGQATCHRA ESDRAANPES ERVVCLCCRI GFQNESCRSC  240
QISEVRSLTS SNIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521146.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521146.10.0PREDICTED: transcription factor MYB3-like
RefseqXP_010521147.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9S9K91e-108MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A0D3CCG91e-116A0A0D3CCG9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7F71e-116A0A3P6F7F7_BRAOL; Uncharacterized protein
STRINGXP_010521146.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-108myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]