PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521144.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 358aa    MW: 37364.8 Da    PI: 10.0781
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264e-3986172287
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s+
  XP_010521144.1  86 PPAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELEHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLSVSLRSSGTTISA 172
                     6789*****************************************************************998666666666553332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.72992146IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-3692191IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVKSVAAAAS ALLCRKKEME SRNNQNLHGR KQESGTALAP LQLSSADNLP SQRSPAPFMG  60
SISGQHAPVA TATASSAGGS LAVVKPPAKK PSKDRHTKVD GRGRRIRMPA MCAARVFQLT  120
RELEHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLS VSLRSSGTTI SAPPSKSAPL  180
SFHGAGLSLY DDLNAGNGSS VDASRKLLNA AVFGFQQQIY PPILSSDASM RNITDLTKPY  240
LLKESNAATE TSGSSPKTGR VHEEERGSGQ GGATAQPMWA ATTNGGNTFW MLPMGGGGEQ  300
HMWGLNQGAM GGQRLGLGVT ESSMGDSRGG GLGMTLDQHQ QQQHRTKGGD ENASNSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521144.10.0PREDICTED: transcription factor TCP22
SwissprotQ9C7G45e-92TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T37e-95R0I9T3_9BRAS; Uncharacterized protein
STRINGXP_010521144.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.16e-86TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]