PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010521097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20590.7 Da PI: 4.8822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p + + r++lg+f t+e+Aa a++aa+ ++g XP_010521097.1 24 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDAAAFHFRG 73 69****999.**********833...59*********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-22 | 23 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.17E-22 | 23 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-32 | 24 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 24 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.485 | 24 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-13 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-13 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAATRSGDDD NNRRNDTQAG IPSAYRGVRK RKWGKWVSEI REPGTKNRIW LGSFETPEMA 60 ATAYDAAAFH FRGREARLNF PELVNNLPRP VSSTPDGVRM AAHEAALSLR AATDDGDSSS 120 SRVGPVTVRL SPTEIEAIND STLGSPTMWM HATAERLMLD GDSLGFADDT YQNVWDNYQT 180 DSLWDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 25 | 86 | 6 | 68 | ATERF1 |
3gcc_A | 2e-17 | 25 | 86 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010521097.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 2e-55 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016163 | 2e-55 | AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. | |||
GenBank | BT010764 | 2e-55 | BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds. | |||
GenBank | BT011790 | 2e-55 | BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds. | |||
GenBank | CP002684 | 2e-55 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521097.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 4e-79 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A0D3APU9 | 2e-87 | A0A0D3APU9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D9C0 | 2e-87 | A0A3P6D9C0_BRAOL; Uncharacterized protein | ||||
STRING | XP_010521097.1 | 1e-134 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-67 | ERF family protein |