PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRF | ||||||||
Protein Properties | Length: 345aa MW: 38028.4 Da PI: 7.7971 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79 | 4.6e-25 | 96 | 141 | 1 | 46 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrCrRtDGKkWRCsr+v++++k+CErHlhrgr rsrk++e+s XP_010520938.1 96 DSEPGRCRRTDGKKWRCSRDVVPNHKYCERHLHRGRPRSRKHVEPS 141 689****************************************975 PP | |||||||
2 | QLQ | 48.8 | 2.2e-17 | 51 | 83 | 2 | 34 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT++Q +L++Q+++yKy++a+ PvP +Ll a XP_010520938.1 51 PFTHEQMKELERQAMIYKYMMASIPVPFDLLIA 83 9*****************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-9 | 50 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.732 | 51 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-11 | 51 | 82 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.294 | 96 | 140 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.5E-20 | 98 | 139 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDVLCFSDKT TGYRTDLQMG LNLQHKEPSF GHRDMEIHHF SKAGALGYCY PFTHEQMKEL 60 ERQAMIYKYM MASIPVPFDL LIASTSSSYN PKVTGDSEPG RCRRTDGKKW RCSRDVVPNH 120 KYCERHLHRG RPRSRKHVEP SRRRLPYARG NNNGSSDKTR DSGAAPRLSL NSIGNHSSYG 180 VEPRGSFLWD TKKGDIFPME TETEQNSKYL NFIDVWSEGV AAPDEQHCST PVFRSSVSTN 240 RDPSLTSLEL SMGGNNLVDD EMGWIQMGLG VTGYGGSSTE IPSWLTPAAT PGGPLAEILR 300 PTPIFTSSVG DGESCYCLTA TATSSSTSGA MKRTTASLSD GSSQS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520938.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520938.1 | 0.0 | PREDICTED: growth-regulating factor 7 | ||||
Swissprot | Q9FJB8 | 1e-110 | GRF7_ARATH; Growth-regulating factor 7 | ||||
TrEMBL | A0A178UMM3 | 1e-107 | A0A178UMM3_ARATH; GRF7 | ||||
STRING | XP_010520938.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12106 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-109 | growth-regulating factor 7 |
Publications ? help Back to Top | |||
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