PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520938.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 345aa    MW: 38028.4 Da    PI: 7.7971
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.6e-2596141146
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                     d+epgrCrRtDGKkWRCsr+v++++k+CErHlhrgr rsrk++e+s
  XP_010520938.1  96 DSEPGRCRRTDGKKWRCSRDVVPNHKYCERHLHRGRPRSRKHVEPS 141
                     689****************************************975 PP

2QLQ48.82.2e-175183234
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                    +FT++Q  +L++Q+++yKy++a+ PvP +Ll a
  XP_010520938.1 51 PFTHEQMKELERQAMIYKYMMASIPVPFDLLIA 83
                    9*****************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-95086IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.7325186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-115182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.29496140IPR014977WRC domain
PfamPF088794.5E-2098139IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDVLCFSDKT TGYRTDLQMG LNLQHKEPSF GHRDMEIHHF SKAGALGYCY PFTHEQMKEL  60
ERQAMIYKYM MASIPVPFDL LIASTSSSYN PKVTGDSEPG RCRRTDGKKW RCSRDVVPNH  120
KYCERHLHRG RPRSRKHVEP SRRRLPYARG NNNGSSDKTR DSGAAPRLSL NSIGNHSSYG  180
VEPRGSFLWD TKKGDIFPME TETEQNSKYL NFIDVWSEGV AAPDEQHCST PVFRSSVSTN  240
RDPSLTSLEL SMGGNNLVDD EMGWIQMGLG VTGYGGSSTE IPSWLTPAAT PGGPLAEILR  300
PTPIFTSSVG DGESCYCLTA TATSSSTSGA MKRTTASLSD GSSQS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520938.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520938.10.0PREDICTED: growth-regulating factor 7
SwissprotQ9FJB81e-110GRF7_ARATH; Growth-regulating factor 7
TrEMBLA0A178UMM31e-107A0A178UMM3_ARATH; GRF7
STRINGXP_010520938.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-109growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]