PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520889.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 321aa    MW: 36106.5 Da    PI: 7.1514
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++++++G+  W+t ++  g++R++k+c++rw +yl
   XP_010520889.1 14 KGPWTPEEDEKLVEYIQKHGPCKWRTLPKLAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E+++++++++ lG++ W++Ia +++ gRt++++k++w+++
   XP_010520889.1  67 RGEFSPQEEDIIIQLHRVLGNK-WSAIATHLP-GRTDNEIKNYWNTH 111
                      899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129419.684961IPR017930Myb domain
SuperFamilySSF466891.87E-3111108IPR009057Homeodomain-like
SMARTSM007172.7E-151363IPR001005SANT/Myb domain
PfamPF002493.2E-171461IPR001005SANT/Myb domain
CDDcd001672.24E-121661No hitNo description
PROSITE profilePS5129426.88462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2765117IPR009057Homeodomain-like
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002494.8E-1667111IPR001005SANT/Myb domain
CDDcd001672.36E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGKSKCCEEE DVKKGPWTPE EDEKLVEYIQ KHGPCKWRTL PKLAGLKRCG KSCRLRWTNY  60
LRPDIKRGEF SPQEEDIIIQ LHRVLGNKWS AIATHLPGRT DNEIKNYWNT HIKKKLVRMG  120
IDPVTHCPKI NLLQLSSILN SSLLFKTPLQ QDSVPINPLL DPTSSNSAYL NPGFLNQLAA  180
TLLTDLSKNP PPYNDQTGSY QLQTDLNHQL AISNQLSLDH QTGLLNSVPA QLQTIGEHAN  240
EYSVQAGLDN QSMSHVPLTT GWNLGSILSA TPSSSSTPLN SSSAAYMNGR SEDDRESYGN  300
DMLMFDHYHH HHHHHNNPHD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31111164108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00563DAPTransfer from AT5G54230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520889.10.0PREDICTED: transcription repressor MYB6
TrEMBLA0A1J3J1B61e-111A0A1J3J1B6_NOCCA; Transcription factor MYB39
STRINGXP_010520889.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144651722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54230.12e-97myb domain protein 49