PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520838.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 322aa    MW: 34597.3 Da    PI: 6.6637
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.4e-15225262136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++Cg ++  Tp++Rrgp g++tLCnaCGl++  kg++
  XP_010520838.1 225 CTHCGISSkcTPMMRRGPLGPRTLCNACGLFWSYKGTM 262
                     ******999***********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.59889124IPR010399Tify domain
SMARTSM009791.7E-1189124IPR010399Tify domain
PfamPF062006.7E-1191123IPR010399Tify domain
PfamPF062038.9E-15156198IPR010402CCT domain
PROSITE profilePS5101712.55156198IPR010402CCT domain
SMARTSM004017.7E-14219272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.884219279IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-12220272No hitNo description
CDDcd002021.14E-13224268No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14224266IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003204.5E-12225262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYGPHPQAMN NANQIGSTGA GASASAGEDD GFGSAATSRH ITYDGGVSMD EIPRHDSMYV  60
HGGVPELVPH GSELVPHRSE SSDLMVSRQP EGPNQLTLSF RGQVYVFDAV GPDKVDTVLS  120
LLGGCPELSP GPQGMETPQQ NLPVLEYQNQ CSLPQRAQSL DRFRKKRDAR CFEKKVRYGV  180
RQEVALRMPR NKGQFSSSKK PDSTYSSGTD QESTQNDDGH PNISCTHCGI SSKCTPMMRR  240
GPLGPRTLCN ACGLFWSYKG TMRDLSKKFD DNQSLIVKQG DGDADTDAAA DANNSNAGAV  300
IHGRKTLVCV AGGDNSSFSG DH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520838.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH61e-140GAT25_ARATH; GATA transcription factor 25
TrEMBLD7M8T91e-140D7M8T9_ARALL; Zinc-finger protein expressed in inflorescence meristem
STRINGXP_010520838.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-124GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]