PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520352.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 798aa    MW: 88524 Da    PI: 6.9569
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.5e-24170271199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_010520352.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyDKQ-RPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 261
                     99****************************96433.45679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_010520352.1 262 GELRLGIRRA 271
                     999****996 PP
2Auxin_resp116.91.7e-38295376182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+s ks+F+v+Y+Pra+++eF++++ek+++ + ++vs+G+Rf+m++e++d++e+r++G+v+g+sdldp+rWpnSkWr+L
  XP_010520352.1 295 VANAVSAKSMFHVFYSPRATHAEFIIPYEKYMACIGNPVSIGTRFRMRYEMDDCPEKRCTGVVTGISDLDPYRWPNSKWRCL 376
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43163283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-42163284IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-23168270No hitNo description
SMARTSM010192.9E-24170272IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267170272IPR003340B3 DNA binding domain
PfamPF023627.6E-22170271IPR003340B3 DNA binding domain
PfamPF065072.0E-32295376IPR010525Auxin response factor
PROSITE profilePS5174522.527670752IPR000270PB1 domain
SuperFamilySSF542773.79E-9674749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MEFDLNHEAA SVGEKSDDGG GLVKGSSGNS PSSSSSCSSG LSSSSSASAS SIYSELWHAC  60
AGPLTSLPKK GNVVVYLPQG HLEQGAMVSS SAPLSPMDIP KFDLQPQIFC RVVNIRLLAN  120
KETDEVYTQL TLLPQQELAV LNLEGKELLE LGGDGERNGS LSTKQTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPPLD YDKQRPSQEL VAKDLHGVEW RFRHIYRGQP RRHLLTTGWS  240
IFVSQKNLVS GDAVLFLRGE NGELRLGIRR AARPRHGLPS SVIEQNSFSN ILSLVANAVS  300
AKSMFHVFYS PRATHAEFII PYEKYMACIG NPVSIGTRFR MRYEMDDCPE KRCTGVVTGI  360
SDLDPYRWPN SKWRCLLVRW DESFMGDHQE RISPWEMDPS VSLPPWTIQP SPRPKRSRIG  420
LLNTPPGNPI MERGAFLDFE ELVRPSKVLQ GQENIGFASH VHGCDVMNRR KLDITMQSHP  480
NPVFVPSGTM AKFDEFIDAT TRAYSSVLDL DRFPRTLQGQ EICSFRSLPQ TAAFNATASG  540
ATILGCNNPF SFQSNRSSFY PLASQGFRSS GIPYHNLYNI GEEPSRRHCH MMSCPRETGA  600
VVNRVQNMGT QKESVLPEKV PTDSGLMTDM TNGQKDDDFN RKVPAGCKLF GFSLPAKTTA  660
SNPENSSKRI CTKKVHKQGS LVGRAIDLSR LNGYDDLITE LERLFTMEGL LHDPDKGWRI  720
LYTDSENDMM VVGDDPWRDF CRVVAKIHIY TKEEVEKMNL GSINEDNQSC LEEAALMVEA  780
SKSSSVSQPD SSPTITRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1135539922354Auxin response factor 1
4ldw_A1e-1135539922354Auxin response factor 1
4ldw_B1e-1135539922354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520352.10.0PREDICTED: auxin response factor 4 isoform X3
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A087GCH40.0A0A087GCH4_ARAAL; Auxin response factor
STRINGXP_010520350.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]