PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 912aa MW: 101614 Da PI: 7.3091 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 7.9e-24 | 284 | 385 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_010520350.1 284 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyDKQ-RPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 375 99****************************96433.45679************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_010520350.1 376 GELRLGIRRA 385 999****996 PP | |||||||
2 | Auxin_resp | 116.6 | 2.1e-38 | 409 | 490 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pra+++eF++++ek+++ + ++vs+G+Rf+m++e++d++e+r++G+v+g+sdldp+rWpnSkWr+L XP_010520350.1 409 VANAVSAKSMFHVFYSPRATHAEFIIPYEKYMACIGNPVSIGTRFRMRYEMDDCPEKRCTGVVTGISDLDPYRWPNSKWRCL 490 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 277 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-43 | 277 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-22 | 282 | 384 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 284 | 386 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-22 | 284 | 385 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-24 | 284 | 386 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-32 | 409 | 490 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.527 | 784 | 866 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.51E-9 | 788 | 863 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MSGISSKNVI FFSGKGIEKD EDECRVGSVL SWLCLSPHLS HSLSPPNCLL FPFSFLLFFF 60 FFFDFFFHVC NCLRLFLLLP LLSTCKWRKK NHTLKPFSLF DAHASLSLSL TLSFMEFDLN 120 HEAASVGEKS DDGGGLVKGS SGNSPSSSSS CSSGLSSSSS ASASSIYSEL WHACAGPLTS 180 LPKKGNVVVY LPQGHLEQGA MVSSSAPLSP MDIPKFDLQP QIFCRVVNIR LLANKETDEV 240 YTQLTLLPQQ ELAVLNLEGK ELLELGGDGE RNGSLSTKQT PHMFCKTLTA SDTSTHGGFS 300 VPRRAAEDCF PPLDYDKQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFVSQK 360 NLVSGDAVLF LRGENGELRL GIRRAARPRH GLPSSVIEQN SFSNILSLVA NAVSAKSMFH 420 VFYSPRATHA EFIIPYEKYM ACIGNPVSIG TRFRMRYEMD DCPEKRCTGV VTGISDLDPY 480 RWPNSKWRCL LVRWDESFMG DHQERISPWE MDPSVSLPPW TIQPSPRPKR SRIGLLNTPP 540 GNPIMERGAF LDFEELVRPS KVLQGQENIG FASHVHGCDV MNRRKLDITM QSHPNPVFVP 600 SGTMAKFDEF IDATTRAYSS VLDLDRFPRT LQGQEICSFR SLPQTAAFNA TASGATILGC 660 NNPFSFQSNR SSFYPLASQG FRSSGIPYHN LYNIGEEPSR RHCHMMSCPR ETGAVVNRVQ 720 NMGTQKESVL PEKVPTDSGL MTDMTNGQKD DDFNRKVPAG CKLFGFSLPA KTTASNPENS 780 SKRICTKKVH KQGSLVGRAI DLSRLNGYDD LITELERLFT MEGLLHDPDK GWRILYTDSE 840 NDMMVVGDDP WRDFCRVVAK IHIYTKEEVE KMNLGSINED NQSCLEEAAL MVEASKSSSV 900 SQPDSSPTIT RA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-112 | 169 | 513 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-112 | 169 | 513 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-112 | 169 | 513 | 22 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520350.1 | 0.0 | PREDICTED: auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A087GCH4 | 0.0 | A0A087GCH4_ARAAL; Auxin response factor | ||||
STRING | XP_010520350.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |