PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520326.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 469aa    MW: 51334.9 Da    PI: 9.1991
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17164213155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010520326.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-11164220No hitNo description
SuperFamilySSF541719.15E-16164222IPR016177DNA-binding domain
PfamPF008472.1E-9164213IPR001471AP2/ERF domain
SMARTSM003807.5E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-17165221IPR001471AP2/ERF domain
PROSITE profilePS5103217.925165221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLDLNLEVGS AKSSPDGGDS AVVKGTSGVV LNQMDESVTS NSSVVNADGS SCVDGEEESC  60
STRTVTFQFG ILKRGAGGEG EKEEEKEAAI TKEFFPVTGG NRNGGDYQNS EAQCSRNSID  120
FSFQRWKQAG EILGPGIGGV ATRVTQQPAQ PVKKSRRGPR SKSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLDADINF SVGDYDEDIK QMANLSKEEV  240
VQMLRRQSTG FSRGSSRYQG GNLHKFGRWG AQVSQLPGKP AYDRTTIKWN EREAATNVEP  300
RAYQMIPEAS NRAPVKLDLD LGISPPGGDG SKQNERLLHL QHVPNDIAGG WNFKMENHTA  360
IAVRGPPFNF LNRGSDHPIP RNLLPSPSFS AEERKQEKGV QSNAASSGFS FSARPSSSTT  420
TPLLLPHQPF SNPTTLPSLY FIAQSSNNTS HHYPHYHRTV MHRPSQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520326.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520327.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
RefseqXP_010520328.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
RefseqXP_010520329.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG21e-164TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLE4MWP91e-168E4MWP9_EUTHA; mRNA, clone: RTFL01-19-B14
TrEMBLV4LIS41e-168V4LIS4_EUTSA; Uncharacterized protein
STRINGXP_010520326.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-146target of early activation tagged (EAT) 2