PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520178.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 270aa    MW: 29795.5 Da    PI: 9.8626
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32145201158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR+ Rak+e e+k+  k rkpylheSRh hA+rR+Rg+gGrF
  XP_010520178.1 145 EEPVYVNAKQYHGILRRRKLRAKAELENKV-LKVRKPYLHESRHLHAMRRARGCGGRF 201
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-36143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.98144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.1E-28146201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-23147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-23178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMNCGSSSKT MSTASSQCLW RGKSMMDTTS PEPFHSCPRA KSIGAHMNGG DQSVQFGKEP  60
CILFLPDGNG GTESSHTQNG AAMSLLKTSE SFSPLHHFGQ SKAPISCAHS DPYYRVDPVY  120
DPNPMAYPHS LGVQERMVLP LEMAEEPVYV NAKQYHGILR RRKLRAKAEL ENKVLKVRKP  180
YLHESRHLHA MRRARGCGGR FLNTKKLGQN SSNSKSQTKA DDAWGNGSDG GTSNKETPQK  240
DQTYIGVNGI GDSTSSRHRR PALKFDYTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-20145206263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520177.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1
RefseqXP_010520178.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A1R3HMM33e-52A0A1R3HMM3_9ROSI; CCAAT-binding transcription factor, subunit B
STRINGXP_010520177.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.15e-35nuclear factor Y, subunit A7