PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520177.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 300aa    MW: 33236.5 Da    PI: 9.9536
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.4e-32175231158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR+ Rak+e e+k+  k rkpylheSRh hA+rR+Rg+gGrF
  XP_010520177.1 175 EEPVYVNAKQYHGILRRRKLRAKAELENKV-LKVRKPYLHESRHLHAMRRARGCGGRF 231
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-36173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.98174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-28176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFSWFIRLQA DKFAGYVFYG SNLIIAGKQS MMNCGSSSKT MSTASSQCLW RGKSMMDTTS  60
PEPFHSCPRA KSIGAHMNGG DQSVQFGKEP CILFLPDGNG GTESSHTQNG AAMSLLKTSE  120
SFSPLHHFGQ SKAPISCAHS DPYYRVDPVY DPNPMAYPHS LGVQERMVLP LEMAEEPVYV  180
NAKQYHGILR RRKLRAKAEL ENKVLKVRKP YLHESRHLHA MRRARGCGGR FLNTKKLGQN  240
SSNSKSQTKA DDAWGNGSDG GTSNKETPQK DQTYIGVNGI GDSTSSRHRR PALKFDYTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19175236263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520177.10.0PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X1
TrEMBLA0A1R3HMM36e-52A0A1R3HMM3_9ROSI; CCAAT-binding transcription factor, subunit B
STRINGXP_010520177.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.19e-35nuclear factor Y, subunit A7