PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25083.9 Da PI: 10.3895 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.4e-17 | 128 | 216 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k ++ps+v+ +l lp +f+++h k ++ +tl de+g+++e + rk++ l++GW +F+ a++L +gD +vF+l++ s f +v + XP_010520114.1 128 VKSMLPSHVSGGFWLGLPVQFCRSHLPK--QDSAMTLIDEEGEVYETIYLARKTG----LSGGWLGFAVAHDLADGDALVFQLVRPSAF--KVYI 214 6899*********************433..4458***************656665....************************998999..7766 PP E- CS B3 97 fr 98 r XP_010520114.1 215 TR 216 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-23 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-20 | 122 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.38E-26 | 125 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 127 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-24 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 128 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVVKKPSSYE KSRLERLEEN KKRMEALNLP RLSLALQSTS PKSSPMKKSK PRIQEKKLVA 60 VRRSSRLSNH PYPVYKEVTV QRVEIPRRIS KRRDLSNRVY ASDESRAEAL AKAEKLQDEL 120 GDEYPKLVKS MLPSHVSGGF WLGLPVQFCR SHLPKQDSAM TLIDEEGEVY ETIYLARKTG 180 LSGGWLGFAV AHDLADGDAL VFQLVRPSAF KVYITRASGN TP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520114.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520114.1 | 1e-162 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-92 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1R3HWU6 | 1e-104 | A0A1R3HWU6_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A251REU1 | 1e-104 | A0A251REU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_010520114.1 | 1e-161 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-87 | B3 family protein |
Publications ? help Back to Top | |||
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