PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519934.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 830aa    MW: 90365.7 Da    PI: 6.4293
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.41.1e-16473512342
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C Nk e+
  XP_010519934.1 473 NKRCNCKKTKCLKLYCDCFAAGVYCDESCACQGCLNKPEH 512
                     799*********************************9876 PP
2TCR49.87e-16559597139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs+ C+Ce+CkN 
  XP_010519934.1 559 RHKRGCNCKKSMCLKKYCECYQGGVGCSSGCRCENCKNI 597
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-14471512IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.22472599IPR005172CRC domain
PfamPF036381.7E-12474509IPR005172CRC domain
SMARTSM011142.4E-16559600IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-11561596IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MDSPESSTAK VNPDVNTDAA VNVSRSLNSP SVQESPFSHF VSTFSPLTLG DSSRSSHVFL  60
GLNSPPAIFT TPRANPVHES GLVISDGNTQ ASNEEEKKEK GNENQDKEPR DCVNWDKPAI  120
DLDACLANDS RATATDNDDQ VQSSGSSECV DRYLADNAEE KSTWLDHTVD QKLKHIRQVL  180
EISPSNADTA TCSSLNVMAD YEKEMLTKGL IEEDAKGKGV LGGGQGTGRE EVTNGEGKCK  240
YCSKELHDQC KCLYSQSEKV GCEEERKFPS EIPSEHMQTV QSLEDPNNNV ESLLSKPNDI  300
VVLESEGNQQ RGMSRRCLQF EEAQPKANSN TNSSLAMTAF LRPVSAPSES DPFDSSTSSC  360
SRHLTDTSPT VTDVPCSATN IKQIAPASKP LGIGVHLNSI IKTVPFHHDG NASLKPSDRS  420
MSVLEIRSKI IDDLATPGDK RKFVPENPDH FEQHSQLSPK KKKLSSSPDD DGNKRCNCKK  480
TKCLKLYCDC FAAGVYCDES CACQGCLNKP EHAETVLQTR QQIESRNPLA FAPKIIQSGS  540
DFSMSNMETG TLTTPASARH KRGCNCKKSM CLKKYCECYQ GGVGCSSGCR CENCKNIYGK  600
KDEFLSSREI TERPEPDRRM DLAVARKSSL QAETYHMHKL TPVTPSLQHS DRGKVAPKSQ  660
IIIRRCNHPP DSDPRSLRHS DGTDPNPEAS VEATETSSYN HKTSQNSPEM AGFGPVTTNP  720
LPTPTGCSST SLCTSPTFGS GSGVFNVRED GYTHEILTDA SMAIKPVKVC SPSRKRVSPP  780
RSCLSQAGSS SSVPLRSGRK FILKALPPFP PLTPCVENKS ITPEDNPQPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1647659714121Protein lin-54 homolog
5fd3_B2e-1647659714121Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519934.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X3
STRINGXP_010519931.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-57TESMIN/TSO1-like CXC 2