PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 1000aa MW: 111402 Da PI: 5.8296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.5e-18 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_010519904.1 36 RGQWTAEEDEILRTAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 89*****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 64.7 | 1.7e-20 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ ++++v+++G++ W+tIar+++ gR +kqc++rw+++l XP_010519904.1 88 KGPWTKEEDDMIIQLVHKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 134 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.2 | 1e-14 | 140 | 182 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+++l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_010519904.1 140 KEAWTQEEELILIRAHQIYGNR-WAELTKFLP-GRTDNGIKNHWH 182 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.247 | 31 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-18 | 34 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 37 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.28E-14 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 33.552 | 83 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-31 | 85 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-19 | 87 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-19 | 88 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-17 | 90 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 96 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.025 | 139 | 189 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 139 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 140 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-10 | 142 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 143 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1000 aa Download sequence Send to blast |
MQGECTPVSN LNEGLIDGNQ RTRHGRTSGP ARRSTRGQWT AEEDEILRTA VERFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WTKEEDDMII QLVHKYGPKK WSTIARYLPG 120 RIGKQCRERW HNHLNPSINK EAWTQEEELI LIRAHQIYGN RWAELTKFLP GRTDNGIKNH 180 WHSSVKKKLD SYLASGLLDQ YQALPVVPFQ KSSMFSSSGL MQRTTDDSGC SGGLEEKEPE 240 SSSQNSSTAG YSLSATDFPG LSSTGQHFHT SENPCENEHA TLAAYNLDRF FYPELEDIAA 300 TVSEVSCEME DSSKFPDHSV VTSSSQDCQF SLQDLPDIAS LELRQEISEL STIYMNEGIK 360 SKTPPVQTSS SLQDSISMPS MDIASYQHLT NLLISDGECS GVLFTNQENK ELYVSGSLLQ 420 EPKVADPAEH RDSSLCSSSS DNQISEATKT LALQSCSSRF SALAAPCKET LRPTPLIISS 480 DKCTKESARL ICHPFEVEPK CGINAKDSFI YIDVPTNSPC ANEETETSGQ KDQSYHVNDS 540 KKLVPVNDFA SLSDVKRDSP PIKCEPDVNK EMQHEDLGAS CHESLCFPSL DLSFFSCDLT 600 QSKNDLLQDY SPLGMRKLLM STVTCMSPLR PWDSPTRDHS PGAVLKAGKK TFVGAQSILK 660 KRNRELLTPL SERRSDKKLG TDITSSLARD FSRLDVMFGE SGDQESSLSS PTSISVNYIG 720 ASHEDKENCC RALNVEHEEN GKDKSSLLSS RKMSVENIHC RNSLKNGEQA CSESNTEAKD 780 VSEPAAQNDE SIYCVLPERN TNKQVPFSPD QSISRAEKSQ VSTPGSHLHR TLMVTSNKEH 840 SSASLCLVIN SPSRIRNMED HLVDSSTSNI ANDNLSILCG TPFRRSLESP SAWKSPLFIN 900 SIFCSPRFDT EMTLEDIGYI FSPGDRNYNA VGLMKHPSEH KAEASTDVKE VPSGDEAPKK 960 SSRHTQMNKD NENARGVQEE RRVLDFTDCE SPVKSINFKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-68 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-68 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519904.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519901.1 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
Refseq | XP_010519902.1 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
Refseq | XP_010519903.1 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
Refseq | XP_010519904.1 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
Swissprot | Q94FL9 | 0.0 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | V4KT42 | 0.0 | V4KT42_EUTSA; Uncharacterized protein | ||||
STRING | XP_010519901.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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