PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519902.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 1000aa    MW: 111402 Da    PI: 5.8296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-183682148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEde+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_010519902.1 36 RGQWTAEEDEILRTAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                     89*****************************9.************986 PP
2Myb_DNA-binding64.71.7e-2088134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ ++++v+++G++ W+tIar+++ gR +kqc++rw+++l
   XP_010519902.1  88 KGPWTKEEDDMIIQLVHKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 134
                      79******************************.*************97 PP
3Myb_DNA-binding46.21e-14140182145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+++l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_010519902.1 140 KEAWTQEEELILIRAHQIYGNR-WAELTKFLP-GRTDNGIKNHWH 182
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2473182IPR017930Myb domain
SuperFamilySSF466891.04E-183497IPR009057Homeodomain-like
SMARTSM007174.3E-153584IPR001005SANT/Myb domain
PfamPF002492.4E-153682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223795IPR009057Homeodomain-like
CDDcd001677.28E-143982No hitNo description
PROSITE profilePS5129433.55283138IPR017930Myb domain
SuperFamilySSF466891.69E-3185181IPR009057Homeodomain-like
SMARTSM007171.2E-1987136IPR001005SANT/Myb domain
PfamPF002494.7E-1988134IPR001005SANT/Myb domain
CDDcd001673.12E-1790134No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2796142IPR009057Homeodomain-like
PROSITE profilePS5129419.025139189IPR017930Myb domain
SMARTSM007171.1E-13139187IPR001005SANT/Myb domain
PfamPF002491.1E-12140182IPR001005SANT/Myb domain
CDDcd001671.07E-10142182No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20143189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MQGECTPVSN LNEGLIDGNQ RTRHGRTSGP ARRSTRGQWT AEEDEILRTA VERFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WTKEEDDMII QLVHKYGPKK WSTIARYLPG  120
RIGKQCRERW HNHLNPSINK EAWTQEEELI LIRAHQIYGN RWAELTKFLP GRTDNGIKNH  180
WHSSVKKKLD SYLASGLLDQ YQALPVVPFQ KSSMFSSSGL MQRTTDDSGC SGGLEEKEPE  240
SSSQNSSTAG YSLSATDFPG LSSTGQHFHT SENPCENEHA TLAAYNLDRF FYPELEDIAA  300
TVSEVSCEME DSSKFPDHSV VTSSSQDCQF SLQDLPDIAS LELRQEISEL STIYMNEGIK  360
SKTPPVQTSS SLQDSISMPS MDIASYQHLT NLLISDGECS GVLFTNQENK ELYVSGSLLQ  420
EPKVADPAEH RDSSLCSSSS DNQISEATKT LALQSCSSRF SALAAPCKET LRPTPLIISS  480
DKCTKESARL ICHPFEVEPK CGINAKDSFI YIDVPTNSPC ANEETETSGQ KDQSYHVNDS  540
KKLVPVNDFA SLSDVKRDSP PIKCEPDVNK EMQHEDLGAS CHESLCFPSL DLSFFSCDLT  600
QSKNDLLQDY SPLGMRKLLM STVTCMSPLR PWDSPTRDHS PGAVLKAGKK TFVGAQSILK  660
KRNRELLTPL SERRSDKKLG TDITSSLARD FSRLDVMFGE SGDQESSLSS PTSISVNYIG  720
ASHEDKENCC RALNVEHEEN GKDKSSLLSS RKMSVENIHC RNSLKNGEQA CSESNTEAKD  780
VSEPAAQNDE SIYCVLPERN TNKQVPFSPD QSISRAEKSQ VSTPGSHLHR TLMVTSNKEH  840
SSASLCLVIN SPSRIRNMED HLVDSSTSNI ANDNLSILCG TPFRRSLESP SAWKSPLFIN  900
SIFCSPRFDT EMTLEDIGYI FSPGDRNYNA VGLMKHPSEH KAEASTDVKE VPSGDEAPKK  960
SSRHTQMNKD NENARGVQEE RRVLDFTDCE SPVKSINFKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519902.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519901.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010519902.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010519903.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010519904.10.0PREDICTED: myb-related protein 3R-1
SwissprotQ94FL90.0MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLV4KT420.0V4KT42_EUTSA; Uncharacterized protein
STRINGXP_010519901.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]