PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519897.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 569aa    MW: 63451.2 Da    PI: 7.4206
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.7e-14156194241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+C+Ck+skClk+YCeCfa+g++C+  C+C +C+N+ +
  XP_010519897.1 156 KQKHCSCKNSKCLKLYCECFASGTYCNG-CNCLNCHNNLD 194
                     89**************************.********976 PP
2TCR49.77.2e-16240279140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgCnCkks+ClkkYCeC++a   Cse+C+C+dCkN e
  XP_010519897.1 240 KHNKGCNCKKSRCLKKYCECYQADILCSENCTCQDCKNFE 279
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15155195IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.221156280IPR005172CRC domain
PfamPF036388.3E-11157192IPR005172CRC domain
SMARTSM011145.9E-18240281IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-12243278IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEKFDRVADS HTKILTRQSD FSATGATPGT KTAVPFQETR IQSLSDANSG PPAGELGGED  60
LQPPPPESEI AEEELRLELM SQKRECYVAK QPYLEAATAA GEDKTQPYDV TPPPQKSPIR  120
RTDQHVQRNS SVKCKQEFSA PQGKPEIESK DVTPKKQKHC SCKNSKCLKL YCECFASGTY  180
CNGCNCLNCH NNLDNEAARQ EAVGVILERN PRAFKPKIAG SPHGIKDSQD DEHKAHILGK  240
HNKGCNCKKS RCLKKYCECY QADILCSENC TCQDCKNFEG SEERTALLHG YQNSVSFIKQ  300
AANEAINGAV GFSGFMNTTE SRKRKSEEVP HIVQYQQGNH FPRNGPTPLF PVPNNRVVSV  360
SPKSTYRSPL ADAIQPHHVK ELCSILVSVS MDVPNNFSGG SRETDKRIEK DSMKHYRYAS  420
PDIAIDVLRG EDQAATKGDG SVPYQPDTGD ERHLSPATRA LMCDEDRMII SKKVAEARVT  480
ETEEKQEAKA NYRDSEFSGV YAEKERHVLA NFRDFLARLI TYGSIKEKMS CTLARCERRS  540
KYHMKIETAM DLSSKEPEDG KQSHENAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2915728911132Protein lin-54 homolog
5fd3_B5e-2915728911132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320325SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054052e-39AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026882e-39CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519897.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-137TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLV4KXJ11e-155V4KXJ1_EUTSA; Uncharacterized protein
STRINGXP_010519897.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-120Tesmin/TSO1-like CXC domain-containing protein