PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519786.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 345aa MW: 35737.2 Da PI: 8.1777

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.7	1.8e-65	124	285	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklss 93 +sg+a+CqdCGnqakk+C+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++a++ + +a+ +++ +k++r +q+++s+t++s+ XP_010519786.1 124 GSGSATCQDCGNQAKKECSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLMTATTFAGGNATGssvSTSGTKKPR----LQQQTTSHTSTSN 214 57899********************************************999999887766555222333334444....4677788899999 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++tss +Pe+++++avf+cvrv++++dge+e+aYq++v+ig hvfkG+LydqG++ XP_010519786.1 215 NTPPQSFDTSSshqdgrsregWPEQIRAPAVFKCVRVTALEDGEDEYAYQAVVKIGSHVFKGLLYDQGVDP 285 99999999999999****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-60	127	284	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-27	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-27	235	283	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGMVGLRDVF VVAPAYHHHH QDPSSSTSAA GDHHINGSAA TALGVGVIPL LTASPCIAAA 60 ATAPPQNVDD KIAGIQLWQQ NQYFKNQHNN TLSPMNLMQT GLVTAAATVG GGVGSTSNSG 120 SASGSGSATC QDCGNQAKKE CSHRRCRTCC KSRGFDCSTH VKSTWVPAAR RRERQLMTAT 180 TFAGGNATGS SVSTSGTKKP RLQQQTTSHT STSNNTPPQS FDTSSSHQDG RSREGWPEQI 240 RAPAVFKCVR VTALEDGEDE YAYQAVVKIG SHVFKGLLYD QGVDPKDGFP NISDLHLGGG 300 GRSNASNGNN NNGATASSPM LDPHDVYGGG SSGGGGGFLG NSGYG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGMVGLRDVF VVAPAYHHHH QDPSSSTSAA GDHHINGSAA TALGVGVIPL LTASPCIAAA  60
ATAPPQNVDD KIAGIQLWQQ NQYFKNQHNN TLSPMNLMQT GLVTAAATVG GGVGSTSNSG  120
SASGSGSATC QDCGNQAKKE CSHRRCRTCC KSRGFDCSTH VKSTWVPAAR RRERQLMTAT  180
TFAGGNATGS SVSTSGTKKP RLQQQTTSHT STSNNTPPQS FDTSSSHQDG RSREGWPEQI  240
RAPAVFKCVR VTALEDGEDE YAYQAVVKIG SHVFKGLLYD QGVDPKDGFP NISDLHLGGG  300
GRSNASNGNN NNGATASSPM LDPHDVYGGG SSGGGGGFLG NSGYG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519786.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519785.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-103	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2R6P7Z9	1e-114	A0A2R6P7Z9_ACTCH; Protein LATERAL ROOT PRIMORDIUM like
STRING	XP_010519785.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	8e-81	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]