PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519754.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 277aa    MW: 30168.3 Da    PI: 8.2193
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.28.7e-31171227158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e e+k  +k rkpylheSRh+hA+rRpR++gGrF
  XP_010519754.1 171 QEPVYVNAKQYEGILRRRKARAKAELERKA-IKDRKPYLHESRHRHAMRRPRATGGRF 227
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-33169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.92170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-27172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQPKPGSGNE VEANPHVVPQ PMMYHEPWWR NNTFGVVPQA RPSGIPSNSS SLECPNGSES  60
NDVQSASEDG ALNGENVGTY KDQAATSSRS ENRGQDGNEL GHMSSSMPAM RDQQLSQPPE  120
LVGHYIACVS NPYQDPYYGG MMGAYGHQPL GFPPYIGMPG ERTALLLDMT QEPVYVNAKQ  180
YEGILRRRKA RAKAELERKA IKDRKPYLHE SRHRHAMRRP RATGGRFAKK SEVNGAADNA  240
SRDRVTASAQ SQSTTNSSGS EPVQTNPVDT LNSSGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-17170227158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211220RHRHAMRRPR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519750.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010519751.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010519753.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010519754.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010519755.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010519756.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV51e-142NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLV4LFM51e-146V4LFM5_EUTSA; Uncharacterized protein
STRINGXP_010519750.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-123nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]