PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519530.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 430aa    MW: 47632.5 Da    PI: 5.3775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.2e-13103125426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C f++rtG CkyG++CkF+H+
  XP_010519530.1 103 EDCAFYMRTGSCKYGSSCKFNHP 125
                     89********************9 PP
2zf-CCCH34.43.8e-11151173527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C++++rtG CkyG++C+F+H++
  XP_010519530.1 151 ECKYYFRTGGCKYGESCRFSHSK 173
                     7********************95 PP
3zf-CCCH39.11.3e-12193216326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+f++r+G Ck+G+ CkF+H+
  XP_010519530.1 193 EKECPFYMRNGSCKFGADCKFNHP 216
                     689********************9 PP
4zf-CCCH20.86.8e-07331356227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+  +Ck++H++
  XP_010519530.1 331 DQPECSYYLKTGDCKFKYKCKYHHPK 356
                     689*********************96 PP
5zf-CCCH35.51.7e-11377401226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++lC +++r+G+Ck+G+ CkF H+
  XP_010519530.1 377 DQSLCAHYSRYGICKFGPACKFDHS 401
                     679*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.28E-697126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6899127IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-699126IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6105124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7147175IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-7152173IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413190218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6191217IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10193216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4196215IPR000571Zinc finger, CCCH-type
SMARTSM003560.053329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028329357IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4331356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5333359IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4375402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042375403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5376403IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9377401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5379402IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDKPEEISPT GFDPEPASRS SVVDPSSSDL SEQLRNVGLD ETANEQSGTM SVSEACRIEG  60
NDSKAEDGDC EEEGGGNGDE GWSEDENEIE RRRAMYPVRP EAEDCAFYMR TGSCKYGSSC  120
KFNHPVRTKI QASRDNAKEK DDDTEKLRQI ECKYYFRTGG CKYGESCRFS HSKSKTSLVS  180
ELNFLGLPIR LGEKECPFYM RNGSCKFGAD CKFNHPDPTT IGGNESPSFY GNGGSAGSFS  240
PKAASQASST SWSSSRHLNG TAPFMPVMFS QSRRVPSQTS EWTGYQASVY SPERSVLPAS  300
PYLVKNSSSE TSIYPQYQLQ MPVDEFPERP DQPECSYYLK TGDCKFKYKC KYHHPKNRLP  360
KQPPCALNDK GLPLRPDQSL CAHYSRYGIC KFGPACKFDH SVQPPCSTGS PQAMEAPQVD  420
ANGNESDGWN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519530.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010519530.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-180C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]