PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 904aa MW: 100074 Da PI: 8.6004 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.9 | 3.6e-20 | 812 | 892 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li+ r e+++r++ k +++lWee+s ++++ g+ rsp qCk+ w +l ++y+++k+ +++ +++p+f++++ XP_010519515.1 812 KWKPEEVKKLIRTRGELHSRFQVVKGRMALWEEISTNLMADGIIRSPGQCKSLWASLIQKYEECKADTEGK-----NSWPHFEDMD 892 7*****************************************************************99984.....46*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.2E-67 | 106 | 356 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 4.06E-72 | 107 | 521 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 4.4E-25 | 119 | 316 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 8.1E-11 | 131 | 266 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.7E-7 | 459 | 493 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-5 | 805 | 871 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.84 | 805 | 869 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.9E-17 | 810 | 894 | No hit | No description |
CDD | cd12203 | 6.29E-20 | 811 | 876 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MKTSSFQGFS YTSCHSSPYF DARGSVTPWK MAAFSALSLC PYTFSFRARS RNRSSVSYSA 60 SSPPASGTSS KVPRRRSSRL EGPGRSMEDS VKRKMEQFYE GADGPPLRVL PIGGLGEIGM 120 NCMLVGNYDR YILIDAGVMF PDYDEPGVQK IIPDTTFIKR WRHKIEAVVI THGHEDHIGA 180 LPWVIPALDS HTPIFASSFT MELIKKRLKE NGIFVPSRLK TFKTRRKFMA GPFEIEPITV 240 THSIPDCCGL VLRCADGTIL HTGDWKIDES PLDGKVFDRQ ALEELSKEGV TLMMSDSTNV 300 LSPGRTISET VVADALIRNI SAAKGRVITT QFASNIHRLG SVKAAADLTG RKLVFVGMSL 360 RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA PNNLLIVTTG SQAEPRAALN LASYGSSHSF 420 KLTKEDIILY SAKVIPGNES RVMKMMNRLA DIGPTIVMGR NEMLHTSGHA YRGELEEVLK 480 IVKPQHFLPV HGELLFLKEH ELLGRSTGIR HTTVIKNGEM LGVSHLRNRR VLSNGFSSLG 540 KENLQLMYSD GDKAFGTSSE LCIDERLRIA SDGIVVVSME ILRPHSVDGV AENSIKGKIR 600 ITTRCLWLDK GKLLDALYKA AHASLSSCPV NCPLAHMERT VAEVLRKIVR KYSGKRPEII 660 AVAMENPMAV VSDEVRMKLS GDSNVGSGVS ALKKVLEGQP RRSRSKKTSP QDRPREVDDI 720 VGSARLLDNE EASASGYTVE DTHSGSSEES EDFWKSFITS TSPSPAAKLE NAYTVADAEV 780 KTEDEKISSR DDDSSEASDS ESKPSKRIKR NKWKPEEVKK LIRTRGELHS RFQVVKGRMA 840 LWEEISTNLM ADGIIRSPGQ CKSLWASLIQ KYEECKADTE GKNSWPHFED MDNILSEDPL 900 KKDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 7e-88 | 107 | 665 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 7e-88 | 107 | 665 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 7e-88 | 107 | 665 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 7e-88 | 107 | 665 | 19 | 560 | RIBONUCLEASE J |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519515.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519515.1 | 0.0 | PREDICTED: uncharacterized protein LOC104798948 isoform X2 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A1J3CQJ0 | 0.0 | A0A1J3CQJ0_NOCCA; Ribonuclease J | ||||
STRING | XP_010519515.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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