PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519514.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 904aa    MW: 99857.1 Da    PI: 8.7968
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.93.6e-20812892186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev++Li+ r e+++r++  k +++lWee+s ++++ g+ rsp qCk+ w +l ++y+++k+  +++     +++p+f++++
  XP_010519514.1 812 KWKPEEVKKLIRTRGELHSRFQVVKGRMALWEEISTNLMADGIIRSPGQCKSLWASLIQKYEECKADTEGK-----NSWPHFEDMD 892
                     7*****************************************************************99984.....46*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.2E-67106356IPR001279Metallo-beta-lactamase
SuperFamilySSF562814.06E-72107521IPR001279Metallo-beta-lactamase
SMARTSM008494.4E-25119316IPR001279Metallo-beta-lactamase
PfamPF127068.1E-11131266IPR001279Metallo-beta-lactamase
PfamPF075211.7E-7459493IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
Gene3DG3DSA:1.10.10.606.0E-5805871IPR009057Homeodomain-like
PROSITE profilePS500907.84805869IPR017877Myb-like domain
PfamPF138371.9E-17810894No hitNo description
CDDcd122035.33E-20811876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MKTSSFQGFS YTSCHSSPYF DARGSVTPWK MAAFSALSLC PYTFSFRARS RNRSSVSYSA  60
SSPPASGTSS KVPRRRSSRL EGPGRSMEDS VKRKMEQFYE GADGPPLRVL PIGGLGEIGM  120
NCMLVGNYDR YILIDAGVMF PDYDEPGVQK IIPDTTFIKR WRHKIEAVVI THGHEDHIGA  180
LPWVIPALDS HTPIFASSFT MELIKKRLKE NGIFVPSRLK TFKTRRKFMA GPFEIEPITV  240
THSIPDCCGL VLRCADGTIL HTGDWKIDES PLDGKVFDRQ ALEELSKEGV TLMMSDSTNV  300
LSPGRTISET VVADALIRNI SAAKGRVITT QFASNIHRLG SVKAAADLTG RKLVFVGMSL  360
RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA PNNLLIVTTG SQAEPRAALN LASYGSSHSF  420
KLTKEDIILY SAKVIPGNES RVMKMMNRLA DIGPTIVMGR NEMLHTSGHA YRGELEEVLK  480
IVKPQHFLPV HGELLFLKEH ELLGRSTGIR HTTVIKNGEM LGVSHLRNRR VLSNGFSSLG  540
KENLQLMYSD GDKAFGTSSE LCIDERLRIA SDGIVVVSME ILRPHSVDGV AENSIKGKIR  600
ITTRCLWLDK GKLLDALYKA AHASLSSCPV NCPLAHMERT VAEVLRKIVR KYSGKRPEII  660
AVAMENPMAV VSDEVRMKLS GDSNVGSGVS ALKKVLEGQP RRSRSKKTSP QDRPREVDDI  720
VGSARLLDNE EASASGYTVE DTHSGSSEES EDFWKSFITS TSPSPAAKLE NAYTVADAEV  780
KTEDEKISSR DDDSSEASDS ESKPSKRIKR NKWKPEEVKK LIRTRGELHS RFQVVKGRMA  840
LWEEISTNLM ADGIIRSPGQ CKSLWASLIQ KYEECKADTE GKNSWPHFED MDNILSELGA  900
PAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A1e-8710766519560RIBONUCLEASE J
5a0t_B1e-8710766519560RIBONUCLEASE J
5a0v_A1e-8710766519560RIBONUCLEASE J
5a0v_B1e-8710766519560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519514.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519514.10.0PREDICTED: uncharacterized protein LOC104798948 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A1J3CQJ00.0A0A1J3CQJ0_NOCCA; Ribonuclease J
STRINGXP_010519515.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95392634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]