PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36872.2 Da PI: 6.4196 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+++++++G +W++ ++ g++R++k+c++rw +yl XP_010519490.1 14 KGPWTPEEDEKLIKYIQKHGLSSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.7e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W+tIa++++ gRt++++k++w+++l XP_010519490.1 67 RGKFSPEEEQTILNLHAVLGNK-WSTIASHIP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.014 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.827 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRSPCCDDT GLKKGPWTPE EDEKLIKYIQ KHGLSSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHAVLGNKWS TIASHIPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFTSLSQLM SLANMTGFAD PQLQYPMELI PKLQTELAKL QFFQYLVQPP 180 SMNNINPNDL DILSLLSSVT SIKENSAITN LDLGLLSSYL QDINNLPSLR TLDIINPEPS 240 PNHMKLFSQR ESLPISPIWL HDPSNLSQTP LPTLDPSHVA EDLVRNPFVM EDVGSNITVS 300 TCQDSALAAS TAWPDHLLDD SLFPDIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-30 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00503 | DAP | Transfer from AT5G10280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019056817.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Refseq | XP_019056819.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Refseq | XP_019056822.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9SBF3 | 1e-166 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A178UPI6 | 1e-164 | A0A178UPI6_ARATH; MYB92 | ||||
STRING | XP_010519490.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 1e-168 | myb domain protein 92 |
Publications ? help Back to Top | |||
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