PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519305.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 294aa    MW: 33677.5 Da    PI: 9.699
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.51.5e-23233286255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++ rW+  LH  Fv+++++LGG ++AtP +i elm+v++Lt+++vkSHLQk+Rl
  XP_010519305.1 233 QQGRWSLGLHGVFVNVLDRLGGVQVATPEQICELMGVEDLTVDDVKSHLQKFRL 286
                     5669*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-11230289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-19232289IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-19234286IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSSGDQLSV HSLVETIRDI LKKILKIEDV SERLSRLNDF VKDFQEEMKK IDGYKREVPL  60
SMLLVKEAIS YLKEEAKKCS AENARSVSGE SMPLKKRRRK AEECTQETKE EEEEDGNTMK  120
WLKSDKEMMK KNRVSPVQLR KQDDHTSNPS QRRIPDRKIT NRVESKGDKE GSRLASLSKG  180
CESVSVKKRT EGEEEISSSM RSSKEETGKR GIIPSDRKLK WNLRSVPQMP QQQQGRWSLG  240
LHGVFVNVLD RLGGVQVATP EQICELMGVE DLTVDDVKSH LQKFRLYMRV LNVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519305.10.0PREDICTED: myb family transcription factor EFM-like isoform X1
STRINGXP_010519305.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145351021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-21G2-like family protein