PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519197.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 448aa    MW: 50765.7 Da    PI: 4.6707
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.38.8e-101659340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + + ++++fC  ++ +lC++C +++H+       H++v
  XP_010519197.1 16 ARACDACMRRRAHWFCAADDAFLCQTCDSSIHSAnqlairHERV 59
                    578*****************************667888888876 PP
2CCT64.43.4e-22399442144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKr++R+F KkirYe+RK +Ae+RpR+KGrFv+++
  XP_010519197.1 399 REARVLRYREKRRRRLFAKKIRYEVRKLNAEKRPRIKGRFVRRT 442
                     9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791461IPR000315B-box-type zinc finger
PfamPF006434.6E-81659IPR000315B-box-type zinc finger
CDDcd000212.60E-101761No hitNo description
PROSITE profilePS5101716.172399441IPR010402CCT domain
PfamPF062031.0E-16399441IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVMETQAANV MGGKTARACD ACMRRRAHWF CAADDAFLCQ TCDSSIHSAN QLAIRHERVR  60
LRTCSMSPSS SFSSSVHSQI EKSTGVNAGT LVWYEGFTRK TRTPRRLLRR SLQKKKVVNA  120
IANDDLDFDL DLNSTSNSNE PVVPELGSEE ELFLFPSMVE NEENLNCQVP VFDFSDMEME  180
ANDINKDENS FGFAPDSDKI GGGCHEEEQM ENGLNGFLPF DMDLAELTMD VESLLGEESC  240
MGIKEPGALE FKEDEEKIGL TLRTVKDEEE EEGLGETCRW NLDNGSSVSG GKREEVEDVN  300
GKKGLRSEDN YEEEGEEEER CADEKAKKQS LFLRLDYEAV MIAWDSECSP WTTGRCPDFR  360
PSNFWLDCLG FVIDGSEEAT PAVGSMPRRQ GRGGSDGERE ARVLRYREKR RRRLFAKKIR  420
YEVRKLNAEK RPRIKGRFVR RTSSYCVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104115RRLLRRSLQKKK
2108114RRSLQKK
3408413KRRRRL
4410425RRRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519197.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 7 isoform X2
TrEMBLR0IES11e-107R0IES1_9BRAS; Uncharacterized protein
STRINGXP_010519196.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-70B-box type zinc finger protein with CCT domain