PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519121.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 503aa    MW: 55829.2 Da    PI: 6.9871
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.3e-15220278255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010519121.1 220 IFRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 278
                     69******************666664478446*************************98 PP
2AP249.88.3e-16321372155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010519121.1 321 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 372
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-17219288IPR016177DNA-binding domain
CDDcd000182.50E-22219288No hitNo description
SMARTSM003807.9E-29220292IPR001471AP2/ERF domain
PfamPF008471.5E-11220278IPR001471AP2/ERF domain
PROSITE profilePS5103219.019220286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-16220287IPR001471AP2/ERF domain
PRINTSPR003677.0E-6221232IPR001471AP2/ERF domain
CDDcd000181.96E-11321382No hitNo description
PfamPF008474.4E-10321372IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18321382IPR016177DNA-binding domain
SMARTSM003807.7E-32322386IPR001471AP2/ERF domain
PROSITE profilePS5103219.151322380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18322381IPR001471AP2/ERF domain
PRINTSPR003677.0E-6362382IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MCFDVFLLYS SFVCLLFAIM FHFLGWTNQK PRELFKEEEQ ITASMADSTI LTTFADPQTH  60
AHNPIPKLED FLGDSSSIVR YSSDCQTETQ DSSLTQIYDT HRHPAAAGFF SDHRAIAGFQ  120
TAFSANSGSE VDDSTSIGRT HLGAGEFIGH VVDSSGQELG FHGGGAFSRE ANNKARADPY  180
SGGNDINGKT VAVNEKAVVA VETPDCSKKI ADTFGQRTSI FRGVTRHRWT GRYEAHLWDN  240
SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT ATTNFPISNY TKEMEEMKPL  300
TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA  360
EAYDIAAIKF RGVNAVTNFE MSRYDVEAIM KSSLPIGGVA KRLKLSLESS EPKPTMGHHH  420
HLQQQQFEPS PDHINFALAT NSPIQTQIPC GIPFEAAALY HYHNPSLFQH LPISDSSGSN  480
STVQAPPMAP NPAEFFLWPN QSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519121.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010519106.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.10.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]