PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519088.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-X1
Protein Properties Length: 1307aa    MW: 142190 Da    PI: 8.0336
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X125.62.7e-08519537119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  XP_010519088.1 519 CGRHRCERTCHVGPCDPCQ 537
                     ******************8 PP
2zf-NF-X118.15.7e-06583600118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C + CH+GpC+ C
  XP_010519088.1 583 CGNHSCREVCHPGPCGDC 600
                     ****************99 PP
3zf-NF-X125.43.1e-08641658118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C++ CH G+CppC
  XP_010519088.1 641 CGLHSCNEVCHAGDCPPC 658
                     ****************** PP
4zf-NF-X117.58.8e-06738756119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G Cp+C 
  XP_010519088.1 738 CGQHSCESLCHSGHCPSCL 756
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.06E-6342411No hitNo description
PROSITE profilePS500168.547349410IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.494352408IPR001841Zinc finger, RING-type
PROSITE patternPS013590352407IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.53E-6441502No hitNo description
SMARTSM004380.023464482IPR000967Zinc finger, NF-X1-type
PfamPF014229.9466481IPR000967Zinc finger, NF-X1-type
CDDcd060081.14E-11509557No hitNo description
SMARTSM004383.8E-5519538IPR000967Zinc finger, NF-X1-type
PfamPF014224.0E-6519536IPR000967Zinc finger, NF-X1-type
CDDcd060082.91E-10573618No hitNo description
SMARTSM004381.6E-4583602IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4583600IPR000967Zinc finger, NF-X1-type
CDDcd060087.22E-13631679No hitNo description
SMARTSM004386.5E-6641660IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-6641658IPR000967Zinc finger, NF-X1-type
SMARTSM00438190699730IPR000967Zinc finger, NF-X1-type
PfamPF0142221699709IPR000967Zinc finger, NF-X1-type
CDDcd060082.19E-9728780No hitNo description
SMARTSM004384.5E-4738757IPR000967Zinc finger, NF-X1-type
PfamPF014223.1E-4738755IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-5785832No hitNo description
SMARTSM004380.045795813IPR000967Zinc finger, NF-X1-type
PfamPF0142212795812IPR000967Zinc finger, NF-X1-type
SMARTSM004380.24848878IPR000967Zinc finger, NF-X1-type
PfamPF014220.016848863IPR000967Zinc finger, NF-X1-type
CDDcd060083.43E-5876926No hitNo description
PfamPF0142257880907IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002887909IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1307 aa     Download sequence    Send to blast
MQRLAGAGAS LSNAANRTES NLFDVVDGLR DLSSSCNLFS GGSATDANCL IRSNNLRELS  60
DFVVSTPEIP FAKPVPRLRP SGVTSRAPHA PPKASHVPVW LPSFPDASLY RESSCVKQRS  120
DRLWEESDSV RESFSSGCEI PPAISTSSGC GGRCGGELSG RRDKISFCEF VWVVPTVTVE  180
TGSDSACLES QRMSSQVRRD RRERPRFGPQ GYRQTWVPRG ASTSVVVNEP LISSNLDRDS  240
ASIDANSAPL PVNQPRRHTD AGLLLNNHAR GRGNSALGPP PANRQRRNNG SGQGHPPYNR  300
QRGVSRGHFA RHTRQEIATE RSENKEAGLK DPDLPQLVQE IQDKLMKGAV ECMICYDMVR  360
RSANIWSCTS CYSIFHLNCI KRWVRAPTSV DLAVEKNHGF NWRCPGCQSV QLTSSKEICY  420
RCFCGKRKDP PSDPYLTPHS CGEPCGKPLE KEFAGAETSE KDRCPHVCVL QCHPGPCPPC  480
KAFAPPRHCP CGKKMITTRC SERSSVSTCG QCCNKLLGCG RHRCERTCHV GPCDPCQLLV  540
NANCFCKKKS DVVICGDMNI KGEVKVEYGL FSCSSTCGRL LGCGNHSCRE VCHPGPCGDC  600
DLLPNRIKTC YCGKTTLEEQ RRSCLDPIPS CSYICRKVLP CGLHSCNEVC HAGDCPPCLI  660
QVNQKCRCGS ASRIVECYKT TAEAENFVCE KPCGRKKNCG RHRCSDRCCL LSNPKNDPTH  720
LDWDPHFCQI PCGKKLRCGQ HSCESLCHSG HCPSCLETIF TDLTCACGKT SIPPPLPCGT  780
SPPSCQLLCS VLQPCGHAAS HACHFGDCPP CSVPVEKKCI GGHVVLRNIP CGLKDIRCTK  840
LCGKTRRCGM HACARTCHPE PCDVGVETET CVPISCGQTC GAPRRDCRLH TCAALCHPSD  900
PCPDLRCEFP VTITCSCGRI SAAIPCDAGG TVGGFGVDSL YEASVLKNLP VPLQPVESTG  960
NRIPLGQRKL TCDDDCAKLE WKRVLQDAFD ITPPNLDALH FGENHAMKEI ISDMRDPKWV  1020
LAVEERCKFL VLGKSRGSAN ASALKLHVFC PLQKDKRDAI RLIARRWKLA VSNAGWEPRR  1080
FTVVHVTPKS KPPSRIIGGK GSVTVSALHP PAFDPMVDMD PRLVVSFMDL PRDASISTLV  1140
LRFGGECELV WLNDKNAIAV FHDPARAATA MRRLDHGSVY QGAVMVVVQN VGQTSQARNP  1200
WGGKPDGGTA MEGRRGNPWK KAVIHDDDSW GADDDSPVAS STDIQVKADA RTAVSVNRWS  1260
VLGSEKAMST ASVSANETSM VGNDAGNLQG VGSGEEEDVV DDWEKGL
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519088.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056248.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1J3CMG00.0A0A1J3CMG0_NOCCA; NF-X1-type zinc finger protein NFXL1
STRINGXP_010519088.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1