PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519081.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 428aa    MW: 47963.8 Da    PI: 9.434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-17111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WT+eEd +l+++vkqlG + W+ +a+ +  gR +kqc++rw+++l
   XP_010519081.1 111 RGQWTAEEDRKLIKLVKQLGERKWAIVAENLE-GRAGKQCRERWHNHL 157
                      89******************************.*************97 PP
2Myb_DNA-binding52.21.4e-16164205245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W +eE+++lv+a+ + G++ W+ Ia+ ++ gRt++++k++w+
   XP_010519081.1 164 DGWEEEEEKILVEAHSRIGNK-WAEIAKLIP-GRTENSIKNHWN 205
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.761106161IPR017930Myb domain
SuperFamilySSF466891.2E-28108204IPR009057Homeodomain-like
SMARTSM007179.3E-16110159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-25112164IPR009057Homeodomain-like
CDDcd001671.87E-14114157No hitNo description
PfamPF139212.4E-17114172No hitNo description
SMARTSM007177.5E-14162210IPR001005SANT/Myb domain
PROSITE profilePS5129417.956162212IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-20165210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEGPKTQEKT VVYGAPPPLT AVERFLYGQK NDFLRSKKQR HPTDRQGQIM KAMTDNKENL  60
MMFGPKEEEM TKKNHAAPIN GGGRSEVTAA KTAKGGTFKG TKKKACKNLI RGQWTAEEDR  120
KLIKLVKQLG ERKWAIVAEN LEGRAGKQCR ERWHNHLRPD IKKDGWEEEE EKILVEAHSR  180
IGNKWAEIAK LIPGRTENSI KNHWNATKRR QNSKRKHKRN NSNSSDLSPT AKRPCVLQDY  240
IKSINNSNHD KNKNKNIVVD SCSNPSSMGK CQIFSDGESA SSLVSDSFDE ELILLQNFFA  300
NQPISLENIG FTDYQEPVEM DLSSSSSGVV TRNPNPNSLA TQASHHGMVT PTNTHLPSDL  360
YLSNLLNGTM LFSSGSCSSS SSTSNEDFGY NKFLAPQENS TSERREMDLI EMLSGSCQSS  420
SNIYFPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-451092112104C-Myb DNA-Binding Domain
1msf_C3e-451092112104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207218KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519081.10.0PREDICTED: myb-related protein A-like
SwissprotQ9FIM41e-158MY119_ARATH; Transcription factor MYB119
TrEMBLD7L5781e-158D7L578_ARALL; MYB119
STRINGXP_010519081.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-136myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]