PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519068.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 332aa MW: 35979.8 Da PI: 8.567

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rk k+ss XP_010519068.1 44 QQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKTKRSS 104 7899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	43	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	46	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSSHTDLSSP TPASRSENRI SGAPQPKKPP SSSTSAGKPP QEQQQQTLKC PRCNSPNTKF 60 CYYNNYSLSQ PRHFCKTCRR YWTRGGALRN VPVGGGCRKT KRSSAVKPSS IAAAACSTSS 120 SPLFMEDSSK FFHGLVPPPM DFQLAGLSFN KIVNINPNET NNLHHLSPSP PSLFGEQTST 180 VDVGSGLSLM GFGDFAVTNT STFTGAPGTV GVDGNLASSI ETLSSLNQDL HWKLQQQRMA 240 MLFGSEETTN CSEAASNGVV ERPQPILFRN LETNSSRREV SGDNTPTEWY FGNSAYTIPN 300 NNNGQVNATS TTSHVWNGVQ AWTDLNQYNT LP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519068.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519068.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
Swissprot	Q9LSL6	1e-115	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A397Z0F6	1e-116	A0A397Z0F6_BRACM; Uncharacterized protein
STRING	XP_010519068.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-106	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]