PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518983.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 376aa    MW: 41121.9 Da    PI: 8.7865
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.7e-1823107271
        trihelix   2 WtkqevlaLiearr...............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     Wt +e+++Liea++                 +++ +rgk ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++ 
  XP_010518983.1  23 WTVSETMVLIEAKKmdderrlrrsiglstAEQHDGGRGKPAELRWKWIEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYERRS 107
                     *************96555555555555544444555557******************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761594IPR017877Myb-like domain
PfamPF138372.8E-1422111No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MTDPSGGNHG GGVAMREYRK GNWTVSETMV LIEAKKMDDE RRLRRSIGLS TAEQHDGGRG  60
KPAELRWKWI EDYCWRKGCL RSQNQCNDKW DNLMRDYKKV REYERRSVES SLHVPEDSAS  120
ASASGSASAS SSSYWKMEKS ERKERNLPSK MLSQIYDALV EVVEKKGLSS TVAGGGGGGG  180
QLPRLLHQSL SGPMIGQLKH QIPAPVVLPL PPPPPPPPAP QFTAVSLPQP PPPSFHAQTV  240
LPTVGRSSSD SDTGESLDTS SPAKRRRISE AEAGPSGGGG GSDAVGEAIS RSAFVIADAI  300
RASEERQDKR HKELVSLQER RLKIEESKAE MNRQSLNGLM DAINKLANSI LALASSHDHD  360
HHHHHQHNNQ QQEGPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518983.10.0PREDICTED: uncharacterized protein LOC104798544 isoform X1
TrEMBLA0A087HS011e-120A0A087HS01_ARAAL; Uncharacterized protein
STRINGXP_010518983.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-99Trihelix family protein