PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010518982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 16642.1 Da PI: 8.1405 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.6 | 1.2e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++ l+++la XP_010518982.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPIDKRGDAVSSMVYEANARVRDPVYGCVGAISSLQHQIDVLQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010518982.1 109 QAQAE 113 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.313 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-45 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MKEGGNRKQG TASPCAACKL LRRRCAQDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ 60 ELPIDKRGDA VSSMVYEANA RVRDPVYGCV GAISSLQHQI DVLQTQLAQA QAEVVHLKVR 120 HSAAPQANNK PMFDHMDMVD QVSLGESMWS C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-48 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-48 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010518982.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518982.1 | 1e-111 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 1e-78 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0B0NU77 | 8e-84 | A0A0B0NU77_GOSAR; LOB domain-containing 4-like protein | ||||
TrEMBL | A0A2P5XK95 | 8e-84 | A0A2P5XK95_GOSBA; Uncharacterized protein | ||||
STRING | XP_010518982.1 | 1e-110 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-81 | LOB domain-containing protein 4 |